PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153606001
Common NameGSBRNA2T00153606001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 1037aa    MW: 115979 Da    PI: 9.7444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153606001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31170227260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
  GSBRNA2T00153606001 170 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 227
                          8****************************************.***************85 PP
2WRKY103.11.6e-32313371159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  GSBRNA2T00153606001 313 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 371
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28160229IPR003657WRKY domain
SuperFamilySSF1182906.93E-25167228IPR003657WRKY domain
SMARTSM007742.5E-35169227IPR003657WRKY domain
PROSITE profilePS5081124.076170228IPR003657WRKY domain
PfamPF031064.3E-24170225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35298373IPR003657WRKY domain
SuperFamilySSF1182901.7E-28305373IPR003657WRKY domain
PROSITE profilePS5081137.711308373IPR003657WRKY domain
SMARTSM007741.3E-37313372IPR003657WRKY domain
PfamPF031069.5E-25314371IPR003657WRKY domain
Gene3DG3DSA:3.30.200.201.5E-30518624No hitNo description
SuperFamilySSF561121.32E-90520817IPR011009Protein kinase-like domain
CDDcd078407.23E-139526811No hitNo description
PROSITE profilePS5001144.852526811IPR000719Protein kinase domain
PfamPF000695.1E-70526811IPR000719Protein kinase domain
SMARTSM002203.3E-93526811IPR000719Protein kinase domain
PROSITE patternPS001070532555IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.102.9E-56625883No hitNo description
PROSITE patternPS001080646658IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MAAEDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYLFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD IQRTTTPSSL LTSPMFFPPQ YGSVYTFFIY FSFSTSLVQP QRPDSFPNQM  120
PPSTSTAVHG RQYFEISQAD HRARNHYNNP ANNNNNNRTY NVVNVDKPAD DGYNWRKYGQ  180
KPIKGCEYPR SYYKCTHVNC PVKKKVERSS DGQITQIIYK GQHDHEKPQN RRGGAGGGRN  240
SGEISDIHYI GGSGQMMESS DDSGYGKDHD NDTDDDDLPA SKIRKTDGGV STTHRSVTEP  300
KIVVQTRSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT TANCTVRKHV ERASTDVKAV  360
ITTYEGKHNH DVPAPRNGTV AATSATAGTS DHHRMTSMSG NMQQHMSFAN TNNTGQSPHS  420
SPAGPPRRLR RRLDAAVHRS HPQNNHNRHV LPTPPSHRRV VNSSPKKHRK NDNDAPRSKT  480
TGVSLRSGLS HGNVEAEQVA AGWPSWLSSA APEAVHGWIP LRAEDFEKRE KIGQGTYSNV  540
FRACEVSTGR VMALKKIRVQ NFETENIRFI AREIMILRRL DHPNIMKLEG IIASRNSNSM  600
YFVFDYMEHD LEGLCTSPDI QFTEAQIKCY MQQLIWGVEH CHLRGIMHRD IKAANILVNN  660
KGVLKLADFG LASIVTPRNK NQLTSRVVTL WYRAPELLMG STSYSLSVDL WSVGCVFAEI  720
LTGRPLLKGR TEIEQLHKIY KLCGSPNEDL WEKNKLHPQT KMFKTQHQYE GCLREIFEEF  780
PKTAIDLLEN LLSIDPEKRG TASSALMSEY FNTKPYACDP STLPKYPPNK EMDAKYREEL  840
QRRRRVTIKK RDNLASKKAG KSRRTIREPT NLNKLPTQQE SKKEAETEII VQTPSETSSQ  900
ATTRSEFPYT GLSQTTAPAS GFAWAGTKKR KENDAASTLT YNQPAGSASH VSGMSMAFAK  960
NTFGLTINED KPFLRPHVSL DSSGVHHKKP EEDTASQMNA GANAKIFQTN GMNEILRRTE  1020
SDARIGVQRP PKIERG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A2e-7353285619347Cyclin-dependent kinase 13
5efq_C2e-7353285619347Cyclin-dependent kinase 13
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.3030.0bud| flower| microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153606001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288975.10.0probable WRKY transcription factor 58
TrEMBLA0A3P6A2410.0A0A3P6A241_BRACM; Uncharacterized protein
STRINGBra001023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-159WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]