PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153449001
Common NameGSBRNA2T00153449001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 496aa    MW: 56628.5 Da    PI: 6.2552
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.7e-15171467128
                  NAM   7 FhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvka.eekewyfFskrdkkya.....tgkrknr.atksgyWkat 86 
                          F Pt  +lv + L+k++++ + +    i++   +yk+ Pw +++  +v+  e+  wy++++r++  a      ++r+ r +  sg+Wk++
  GSBRNA2T00153449001  17 FCPTHADLV-NILRKRIDRGERSS--LITDNhILYKTAPWLFQHvrHVSFyEKYVWYYYVTRKQPPAmtrkaDSSRPCRkVGGSGTWKTS 103
                          99*******.78999999999666..455552799*******84333333344599***999875443333356688885566*****77 PP

                  NAM  87 gkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                             k+v++kkg  vg  +   f  +  ++++g kt Wvmhe+ l
  GSBRNA2T00153449001 104 SL-KKVIDKKGVRVGSMHYASFQANveTKKDGIKTGWVMHEFLL 146
                          66.6666669999*********9543388999**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.18111162IPR003441NAC domain
SuperFamilySSF1019413.53E-2016162IPR003441NAC domain
PfamPF023651.9E-917144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLNVIYLETP RISRACFCPT HADLVNILRK RIDRGERSSL ITDNHILYKT APWLFQHVRH  60
VSFYEKYVWY YYVTRKQPPA MTRKADSSRP CRKVGGSGTW KTSSLKKVID KKGVRVGSMH  120
YASFQANVET KKDGIKTGWV MHEFLLDRPG FQELVLCRIK FRPGKDNAQY APIFAPIVIG  180
QPQPPPVETH QDPGTEHQGI MGQDSNYPLL NEDMGEYGQD FGDLVDNQCH YLVQETMDRL  240
QIPMMMNQAL NEEQEWNGYS SPSLAQQYFG QDMVPMTQHL DAQHQHFGSM DEHQGLGSSA  300
QFFGESSGQQ QNHILGTQAT TYHSLMEEQH QDFGSSALFL AQNNQSLRQN NDLLAPRELS  360
AQQQLLRQNS NLSLTQQQNQ IFGEDTYLSP MEQQLWQTHY LQVPVMVNQA FEVQQHVPWS  420
AQPYAQYNGQ NNTLPTVPMT TQQQQDNTVR SLPAQLQLEE QDNAPLKNQT MEEHAAYLPM  480
NQGINEPHGG IVGYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411500.0AC241150.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH085M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573328.10.0uncharacterized protein LOC111214619
TrEMBLA0A3P6B7310.0A0A3P6B731_BRAOL; Uncharacterized protein
STRINGBo3g053090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-12NAC domain containing protein 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]