PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00149649001 | ||||||||
Common Name | GSBRNA2T00149649001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 595aa MW: 66360.3 Da PI: 7.613 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C++ F ++ n++rH r+H GSBRNA2T00149649001 61 HKCDKCTREFCSPVNFRRHKRMH 83 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.97 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MELVKQEGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL 60 HKCDKCTREF CSPVNFRRHK RMHRPSRKPE MYSGKERDAL GAFLDELSAF DAKEILSLKN 120 MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDILD IIQGRPLRFP IYSNQLFSIL 180 DDASEKTFMT NEAASIQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL 240 RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SEEQQQSPAE 300 SSRPLSVASD TEAQRSDSIP TEDSSSLEEP QVLEIDNERN GDTQAAIVDG DGFGNGPNME 360 RRSGRREMER SQYGMPNGFH GNHAPKLGGM RKNGTNRDAR ANTTKVWSRK ADNPKSISPD 420 AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRTKAVEA KPTSEQSTAE 480 VSRPVSSQGR KVSTSNGNTD KKDEHSSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI 540 SAEHVTLVLS QETNMPGNNT HQSSNGVITA ARPKHRMKPE KGANVKYVPK QKIP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 268 | ERKKRKKL |
2 | 263 | 267 | KKRKK |
3 | 266 | 276 | KKLRQKEQRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00149649001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022558897.1 | 0.0 | uncharacterized protein LOC106362485 | ||||
TrEMBL | A0A398AT27 | 0.0 | A0A398AT27_BRACM; Uncharacterized protein | ||||
STRING | Bra013903.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5680 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106442951 |
Publications ? help Back to Top | |||
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