PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147549001
Common NameGSBRNA2T00147549001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 444aa    MW: 49165.4 Da    PI: 5.5612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147549001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-5091361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+GfrF+Ptdeelv +yL++k++g++ e+ +vi+evdi+k+ePwdLp+   vk+++ ew fF++ d+ky++g r nrat +gyWkatgk
  GSBRNA2T00147549001   9 LPVGFRFSPTDEELVRYYLRQKINGRDEEV-RVIREVDICKSEPWDLPHlsVVKTTDAEWLFFCPIDRKYPSGGRMNRATLAGYWKATGK 97 
                          79*************************998.99***************4447788899******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ v++ +++ +g+k+tLvfykgrapkg++t W+mheyr+
  GSBRNA2T00147549001  98 DRMVKT-GKKIIGVKRTLVFYKGRAPKGTRTCWIMHEYRA 136
                          *****9.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-575159IPR003441NAC domain
PROSITE profilePS5100555.0489159IPR003441NAC domain
PfamPF023651.7E-2510135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEVLSLDSLP VGFRFSPTDE ELVRYYLRQK INGRDEEVRV IREVDICKSE PWDLPHLSVV  60
KTTDAEWLFF CPIDRKYPSG GRMNRATLAG YWKATGKDRM VKTGKKIIGV KRTLVFYKGR  120
APKGTRTCWI MHEYRATEQD LDGTKPGQNP FVICKLFKKQ DVVHPEDLKS CEVEPAVSSP  180
TEVSEVSLAF PKTEETKPSD VAESSSLGVS GECHSEVSAP EVTTSELDNI DWTSYLELET  240
LDYNIFSPLD SQLQSELGTS FNGFPSGSTE LFSNQDEAPV QAQAQAQYCS NDIDQSMFDL  300
LDSVLEFPYE FPEQKHPRSL VDTSNKISND VPGTGIKIRA RRAQAPGGAE QFGMQGNASR  360
RLRLQVNHKS EGDSPQHQCI KQEVKDTAEE TVTKGCGSFM RSKSSSIFKN IAAMGGSYRG  420
LFKAGVVAVV FAVSVCSLTG KFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46416012166NO APICAL MERISTEM PROTEIN
1ut4_B8e-46416012166NO APICAL MERISTEM PROTEIN
1ut7_A8e-46416012166NO APICAL MERISTEM PROTEIN
1ut7_B8e-46416012166NO APICAL MERISTEM PROTEIN
3swm_A1e-45416015169NAC domain-containing protein 19
3swm_B1e-45416015169NAC domain-containing protein 19
3swm_C1e-45416015169NAC domain-containing protein 19
3swm_D1e-45416015169NAC domain-containing protein 19
3swp_A1e-45416015169NAC domain-containing protein 19
3swp_B1e-45416015169NAC domain-containing protein 19
3swp_C1e-45416015169NAC domain-containing protein 19
3swp_D1e-45416015169NAC domain-containing protein 19
4dul_A8e-46416012166NAC domain-containing protein 19
4dul_B8e-46416012166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127820.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147549001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204410.0KJ420441.1 Brassica napus NAC transcription factor 91-2 (NAC91-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150983.10.0PREDICTED: NAC domain-containing protein 91-like isoform X2
RefseqXP_013643614.10.0NAC domain-containing protein 91-like isoform X2
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A397ZB040.0A0A397ZB04_BRACM; Uncharacterized protein
STRINGBra009774.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  4. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]