PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146022001

Common Name

GSBRNA2T00146022001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 833aa MW: 92399.1 Da PI: 5.5062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146022001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.1	3.5e-49	386	514	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ vd++k+ePwdLp + v++ ++ew fF++ d+ky++g+r nrat +gyWkatgk GSBRNA2T00146022001 386 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAVDMCKYEPWDLPdlSVVRTMDSEWLFFCPLDRKYPSGSRMNRATIAGYWKATGK 474 79***********************999.99**********96447778899**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s +++ +g+k+tLvfy+grapkg++t W+mheyr+ GSBRNA2T00146022001 475 DRKVKSGSTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 514 **99999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-55	375	537	IPR003441	NAC domain
PROSITE profile	PS51005	54.651	386	537	IPR003441	NAC domain
Pfam	PF02365	5.2E-25	387	513	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002230	Biological Process	positive regulation of defense response to virus by host
GO:0002237	Biological Process	response to molecule of bacterial origin
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003713	Molecular Function	transcription coactivator activity
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MSSSSSREGS PDWLRSFQPP TTTSLLSLSS SSESAPEDSP FRESETISSL PLPDDTEATT 60 IVDSKTKLVT KQVFSRKKKA DATLNLEEKQ DGNKAYGEEN STKLKNDLGG DDSVWLVSSD 120 SEPPSSDPIS QKVIILTEED EDLVILDKEV EPAVKKAPKK KSPKKNSAQE ISEDKDTDSI 180 VADEVTTDKN TKPSSGSSSK LPLVLSEKVN RTKVLVECEG DSIDLSGDMG AVGRVVVSDT 240 TQDVLFANTY HFITFCVVNV GQSEAKIEAI MNDFIQLTPV SNVYEAETMV EGTLEGFLFD 300 SKPPDDQSGD TAEVTKGSGK AKAKSENVVG KKRGRPSKEK QQQQQPAKKA RKKKQKQVRY 360 CSSLKMRKAP RILILNTMEV LSLDALPVGF RFSPTDEELV RYYLRQKING RDDDVRVIRA 420 VDMCKYEPWD LPDLSVVRTM DSEWLFFCPL DRKYPSGSRM NRATIAGYWK ATGKDRKVKS 480 GSTKIIGVKR TLVFYTGRAP KGTRTCWIMH EYRATEKDLD GTKPGQNPFV ICKLFKKQDV 540 VSEASPECGV EPAVSSPTVV DEVRSEVELS EVSLAFPTKE EPKHSTDVAE SSLVVYGECQ 600 SEISAPEVTT NELDHIDWRS YLEFESLDHT MFSPLHSQVQ SELGSAFNGF QYGSNEPFRN 660 QNDPHIQTQY GSNDPDQYMF DLLDLTFQIP YELPEMKHLA QPMPEQILYE PQSLVNTSNK 720 INNDVSETGI KIRTRRAQAQ GCAEQSVMQG NASRRLLLQV NHNSPKPDTD SIKKEVKETT 780 KGCGSFMRSK SSSEFILKKV AAMGCSYRGL LKAGVVAVVF AMSVCSLTGQ FR*

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MSSSSSREGS PDWLRSFQPP TTTSLLSLSS SSESAPEDSP FRESETISSL PLPDDTEATT  60
IVDSKTKLVT KQVFSRKKKA DATLNLEEKQ DGNKAYGEEN STKLKNDLGG DDSVWLVSSD  120
SEPPSSDPIS QKVIILTEED EDLVILDKEV EPAVKKAPKK KSPKKNSAQE ISEDKDTDSI  180
VADEVTTDKN TKPSSGSSSK LPLVLSEKVN RTKVLVECEG DSIDLSGDMG AVGRVVVSDT  240
TQDVLFANTY HFITFCVVNV GQSEAKIEAI MNDFIQLTPV SNVYEAETMV EGTLEGFLFD  300
SKPPDDQSGD TAEVTKGSGK AKAKSENVVG KKRGRPSKEK QQQQQPAKKA RKKKQKQVRY  360
CSSLKMRKAP RILILNTMEV LSLDALPVGF RFSPTDEELV RYYLRQKING RDDDVRVIRA  420
VDMCKYEPWD LPDLSVVRTM DSEWLFFCPL DRKYPSGSRM NRATIAGYWK ATGKDRKVKS  480
GSTKIIGVKR TLVFYTGRAP KGTRTCWIMH EYRATEKDLD GTKPGQNPFV ICKLFKKQDV  540
VSEASPECGV EPAVSSPTVV DEVRSEVELS EVSLAFPTKE EPKHSTDVAE SSLVVYGECQ  600
SEISAPEVTT NELDHIDWRS YLEFESLDHT MFSPLHSQVQ SELGSAFNGF QYGSNEPFRN  660
QNDPHIQTQY GSNDPDQYMF DLLDLTFQIP YELPEMKHLA QPMPEQILYE PQSLVNTSNK  720
INNDVSETGI KIRTRRAQAQ GCAEQSVMQG NASRRLLLQV NHNSPKPDTD SIKKEVKETT  780
KGCGSFMRSK SSSEFILKKV AAMGCSYRGL LKAGVVAVVF AMSVCSLTGQ FR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	381	538	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	381	538	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	381	538	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	381	538	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	381	538	15	169	NAC domain-containing protein 19
3swm_B	7e-43	381	538	15	169	NAC domain-containing protein 19
3swm_C	7e-43	381	538	15	169	NAC domain-containing protein 19
3swm_D	7e-43	381	538	15	169	NAC domain-containing protein 19
3swp_A	7e-43	381	538	15	169	NAC domain-containing protein 19
3swp_B	7e-43	381	538	15	169	NAC domain-containing protein 19
3swp_C	7e-43	381	538	15	169	NAC domain-containing protein 19
3swp_D	7e-43	381	538	15	169	NAC domain-containing protein 19
4dul_A	6e-43	381	538	12	166	NAC domain-containing protein 19
4dul_B	6e-43	381	538	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6701	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250\|UniProtKB:Q9SCK6, ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774, ECO:0000269\|PubMed:18785827, ECO:0000269\|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146022001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269\|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269\|PubMed:24418554}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ420440	0.0	KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013724668.1	0.0	NAC domain-containing protein 91-like isoform X2
Swissprot	Q9LKG8	0.0	NAC91_ARATH; NAC domain-containing protein 91
TrEMBL	A0A0D3E1F5	0.0	A0A0D3E1F5_BRAOL; Uncharacterized protein
STRING	Bo9g012590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2416	28	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	0.0	TCV-interacting protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Li Y, et al. The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains. Virus Res., 2016. 222: p. 94-105 [PMID:27288723]