PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144349001
Common NameGSBRNA2T00144349001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 274aa    MW: 31447.6 Da    PI: 5.4908
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144349001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.52.5e-17208257151
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                          k r++W   L  +F++av++L G++  +Pk+ile m+v +Lt+e+v+SHLQ
  GSBRNA2T00144349001 208 KRRVVWDDYLNGKFLDAVNSL-GNNDVVPKKILERMNVSSLTRENVASHLQ 257
                          689******************.9999************************* PP
2Response_reg45.54.2e-16361431108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+ d++++ +++l++ le+ +y ev+++ + e a  ll++++  +D+ ++     + + ++l++eir+e  ++pii+ ++ ++ e +++
  GSBRNA2T00144349001  36 VLLFDEDRIYLQILEKHLEEFQY-EVTTCHEEERATYLLCNHRnmFDIAIIEAHNLEGKIFRLISEIRSEI-DIPIIITSQDDSRESVTK 123
                          8999*******************.***************99999********9999999*********988.****************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                           ++ Ga d+l Kp+ pe+l+
  GSBRNA2T00144349001 124 WMRNGACDYLIKPIRPEDLR 143
                          ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-2132155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-2233171No hitNo description
SMARTSM004485.0E-534146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.87735150IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.8E-1136144IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.40E-1137143No hitNo description
Gene3DG3DSA:1.10.10.602.2E-17206257IPR009057Homeodomain-like
SuperFamilySSF466891.45E-11206257IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-19208258IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLQKWKPSGD ESGGPDRDLP NSRDMFSGNF PEGLRVLLFD EDRIYLQILE KHLEEFQYEV  60
TTCHEEERAT YLLCNHRNMF DIAIIEAHNL EGKIFRLISE IRSEIDIPII ITSQDDSRES  120
VTKWMRNGAC DYLIKPIRPE DLRLIYKYLV KKMELRGITV AEEAEEKAAA EKSSSVGDST  180
IRSPNRRKRN MLQTDEDPDH NRDSATKKRR VVWDDYLNGK FLDAVNSLGN NDVVPKKILE  240
RMNVSSLTRE NVASHLQITT GLGSDLCPPR NPI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144349001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325780.0AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151725.10.0PREDICTED: two-component response regulator ARR14-like
SwissprotQ9FJ164e-99APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A3P5YKQ30.0A0A3P5YKQ3_BRACM; Uncharacterized protein
TrEMBLM4F8L50.0M4F8L5_BRARP; Uncharacterized protein
STRINGBra037427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.12e-78pseudo-response regulator 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]