PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143207001 | ||||||||
Common Name | GSBRNA2T00143207001, LOC106354454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 400aa MW: 45021.5 Da PI: 9.6176 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4.2e-32 | 217 | 270 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GSBRNA2T00143207001 217 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 270 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 214 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 215 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-24 | 217 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-7 | 218 | 269 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MSMEGVFLEK PKSNTTTTLP DLSLNISLPD THHHLRHNEL SRRSSQTDNN RSSNLELSLS 60 HHNNPSSSPS TRILHCPDPR NLNLSHHQHY NNSILNGRSL HQRVDESDIN NIHRPIRGIP 120 VYHNRSFPFH QQTSHSSSLG GGDLDSSSIL NSSSGYNSAY RSLQSSPRLK GVPVHHHNHY 180 GVVGSSDSSS PHHHHHHGMI RSRFLPKMPT KRSMRAPRMR WTSSLHARFV HAVELLGGHE 240 RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTNKPAAS SDGSGEEEMG INGNEVHHQS 300 STNQREKSDD SSHQEIDFPS TQPRWGNSSR ETWRSSSNCS SDIDTMARTS STPMISHHQR 360 SILLNQEQKS NDQVKRWGDL SCNNPSLEFT LGRPDWHNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-16 | 218 | 272 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-16 | 218 | 272 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-16 | 218 | 272 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-16 | 218 | 272 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-16 | 218 | 272 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23894 | 1e-151 | vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In globular embryos, expressed in the peripheral cells in a basal region above the hypophysis. In heart-stage embryos, expressed in the periphery of the presumptive hypocotyl and on the abaxial side of cotyledon primordia. During vegetative growth, expressed the abaxial side of very young leaf primordia. Expressed on the abaxial side of carpel primordia and then in a localized region on the abaxial margin that gives rise to the septum. Later, expressed in the tissue that gives rise to ovules. {ECO:0000269|PubMed:11525739}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing phloem and lateral root. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143207001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY030192 | 0.0 | AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds. | |||
GenBank | AY048688 | 0.0 | AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds. | |||
GenBank | BT026436 | 0.0 | BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649838.1 | 0.0 | transcription repressor KAN1 isoform X1 | ||||
Swissprot | Q93WJ9 | 0.0 | KAN1_ARATH; Transcription repressor KAN1 | ||||
TrEMBL | A0A3P5ZWZ5 | 0.0 | A0A3P5ZWZ5_BRACM; Uncharacterized protein | ||||
STRING | Bo2g013140.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6606 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106354454 |