PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142487001
Common NameGSBRNA2T00142487001, LOC106360566
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 537aa    MW: 60317.2 Da    PI: 8.9787
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142487001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.3e-14231011297
                          HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++ l +p  f+++h  g +k+  kt +l++  s ++W vk+  ++ +    +t+GW++F+ a++L+ gD+++F+++g++ f  +v++f
  GSBRNA2T00142487001  23 HTH-LNIPVAFFSKHvqGRNKHI-KTAKLRTdASAKTWLVKI--NGLR----FTDGWEDFAVAHELRIGDIIIFRHEGEMVF--HVTAF 101
                          444.99**********7555544.68888875888*******..5555....9**********************9998888..88776 PP

2B369.73.8e-22160253599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++++l+ +rl++pk fa+++g+++ ++k+++l +e+grsW+++++y+ ++ +++ + GW++F+ +ng+++g  ++F+l++ +++ +v+
  GSBRNA2T00142487001 160 HVSPSSLSCDRLYVPKGFAKSNGLDNMSGKEIVLLNEEGRSWNLNITYNESGMHTFVRPGWRSFCAENGMNQGHHCTFELVR-KSAPPVL 248
                          5678899999*********************************************************************998.8888888 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          ++ r+
  GSBRNA2T00142487001 249 RLSRA 253
                          88775 PP

3B364.31.9e-20274363697
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++l+++ l+l  kf++++g+kk  s +++l++e+g +W+v l++  +s+r++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ 
  GSBRNA2T00142487001 274 VSSNSLRTDKLYLQMKFVAANGLKKGFS-EIILKNEWGGRWSVGLRHYASSNRTYLGPGWKTFCQVNGIKAEDSFMFKLVE-TGDKPVLL 361
                          57899999****************9887.*************************************************998.55567777 PP

                          EE CS
                   B3  96 vf 97 
                          ++
  GSBRNA2T00142487001 362 LC 363
                          76 PP

4B350.53.6e-16440534398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                            +++ ++lk++   lp  f++ +g++k  +++++l  ++g ++W v l  +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ 
  GSBRNA2T00142487001 440 RLTLTQNALKTSVKHLPLGFTRVNGINK--PRKIMLLGKDGvKKWVVDLLKNKSTGTMRIRKGWRELCDAHGVKVGESFLLELIWDEEAI 527
                          556678888999999*********9996..558****************99999999*****************************9999 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +v+k++ 
  GSBRNA2T00142487001 528 PVLKFCT 534
                          9999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-209111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.61711104IPR003340B3 DNA binding domain
CDDcd100172.48E-1512101No hitNo description
SMARTSM010191.1E-2114104IPR003340B3 DNA binding domain
PfamPF023628.2E-92598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-22149250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20150250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.931156254IPR003340B3 DNA binding domain
CDDcd100172.51E-17156243No hitNo description
SMARTSM010192.1E-28157254IPR003340B3 DNA binding domain
PfamPF023622.4E-20160253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17266365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.17269365IPR003340B3 DNA binding domain
SMARTSM010196.2E-20270366IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-17273366IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-19274364IPR003340B3 DNA binding domain
CDDcd100172.82E-15275363No hitNo description
Gene3DG3DSA:2.40.330.101.4E-15434534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16434533IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-13436533No hitNo description
PROSITE profilePS5086312.52438535IPR003340B3 DNA binding domain
PfamPF023622.6E-15438534IPR003340B3 DNA binding domain
SMARTSM010191.6E-20438536IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TDASAKTWLV  60
KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID  120
DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAKS  180
NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV  240
RKSAPPVLRL SRAEHDPKPA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF  300
SEIILKNEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMFK LVETGDKPVL  360
LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK  420
RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IMLLGKDGVK  480
KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142487001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638638.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X2
SwissprotQ84WP31e-155REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A3N6UF900.0A0A3N6UF90_BRACR; Uncharacterized protein
STRINGBo5g044970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-152B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]