PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136760001
Common NameGSBRNA2T00136760001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23455.2 Da    PI: 9.9416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136760001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-225199149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k i+++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y +
  GSBRNA2T00136760001 51 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99
                         689********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.06743103IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-2343102IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-2244114IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174565IPR002100Transcription factor, MADS-box
PfamPF003191.3E-215399IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-176580IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-1780101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEEVRETLPT TFLKPNEQLQ IPNVLVTQTK KELTKPRNPK TSRGRLKIEI KEIKEDSKRH  60
VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG HVDSLMDKYL RKIPVNLDVY  120
SGGDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPAWPINMMG  180
WKPQMDMQSM GDVTDGVTRC RLGQNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A5e-1436100973PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B5e-1436100973PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136760001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604087.11e-151PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0D3DWU61e-149A0A0D3DWU6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GQC41e-149A0A3P6GQC4_BRAOL; Uncharacterized protein
STRINGBo8g104960.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.12e-73M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]