PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133138001
Common NameGSBRNA2T00133138001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 243aa    MW: 27027.8 Da    PI: 3.8922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133138001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.6e-1244128187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                          ffkv +p d++    l +p +f +   ++k+ +  +++++  g+ W++kl  rk+ g     + + +GWk+ vk+ +Lk g+f+ F++d 
  GSBRNA2T00133138001  44 FFKVYLPDDSGD--DLDIPISFNSF--LPKPLPEYIIVRSIYGNIWKLKL--RKHCGDdvdkVSMLNGWKRIVKDEDLKGGEFLAFEFDC 127
                          788886666554..59******743..56779999***************..777777777866777********************876 PP

                          S CS
                   B3  87 r 87 
                           
  GSBRNA2T00133138001 128 Y 128
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-1737140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1437138IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-1442136No hitNo description
PROSITE profilePS5086310.78542139IPR003340B3 DNA binding domain
PfamPF023622.2E-944126IPR003340B3 DNA binding domain
SMARTSM010192.5E-1244139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNKGFSFTLF FLLDSPVTLY LTFIISFFFF FGTGDSSDDC LPKFFKVYLP DDSGDDLDIP  60
ISFNSFLPKP LPEYIIVRSI YGNIWKLKLR KHCGDDVDKV SMLNGWKRIV KDEDLKGGEF  120
LAFEFDCYRL FNFCIYGQAT CKRLGSSVKT KEITDESEGE DGKSGVDVIV IDDDSTDDDD  180
DDDSVSSGQG SGMEDQSTKD IIVIDEDTTD DDDDETRSGV ETEIIEKGSS EVSTKSDSGE  240
GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-13341411104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133138001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612535.11e-145PREDICTED: B3 domain-containing protein At5g60142-like
SwissprotQ9LST32e-56Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A0D3ECZ71e-144A0A0D3ECZ7_BRAOL; Uncharacterized protein
STRINGBo9g141120.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.17e-56B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]