PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132901001
Common NameGSBRNA2T00132901001, LOC106450503
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 488aa    MW: 54357.4 Da    PI: 5.2973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132901001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.1e-14322368455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  GSBRNA2T00132901001 322 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 368
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5050232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-18317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-15321372No hitNo description
Gene3DG3DSA:4.10.280.103.2E-17322377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-17324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNTSDVVGWE DEDTRSMVSA VLGNSASEFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDC  60
PNSETFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE STVCYNLEEE MRWQYMRKRV  120
LQKLHRMFGG SDEDDYALSL ENVTATEMFF LASMYFFFNH GEGGPGRCFA SGRHVWLSDA  180
VGSDYCFRSF MVKSAGIRTV VMVPTDAGVL ELGSVWSLPE NVELVRSVQA LFMRRVKPPN  240
MSGGKIHKLF GQELNSSDKV AHQVQENVNV VVVEDTNHKV MKTSCNEKRP ASLLPGGVSV  300
VEEKRPRKRG RKPANGREEA LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  360
ISYIKELQER VKIIEAEGVM TIGTEESQEV VDIQAGEEEV VVRVVSPLES HPASRIIQAM  420
RNSEVVSVVE SKLSLAEETL FHTFVVKNNN GSDPLTKEKL IAAAYPQTGL TQQLLLPSST  480
SQVSGDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26316379265Transcription factor MYC2
5gnj_B1e-26316379265Transcription factor MYC2
5gnj_E1e-26316379265Transcription factor MYC2
5gnj_F1e-26316379265Transcription factor MYC2
5gnj_G1e-26316379265Transcription factor MYC2
5gnj_I1e-26316379265Transcription factor MYC2
5gnj_M1e-26316379265Transcription factor MYC2
5gnj_N1e-26316379265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303311KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292131e-133seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132901001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747629.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
RefseqXP_022574852.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY81e-142AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A397Z5N30.0A0A397Z5N3_BRACM; Uncharacterized protein
STRINGBra004532.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-143ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]