PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131388001
Common NameGSBRNA2T00131388001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 518aa    MW: 58280.3 Da    PI: 6.1755
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.4e-34161072102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ 
  GSBRNA2T00131388001  16 FLTKTYEMVDDSSSDSIVSWSQSNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQP 96 
                          9**************************************************************99988.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  GSBRNA2T00131388001  97 HLMKNIHRRKP 107
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.35E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF520584.59E-5432513IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNR SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSLPNLQAQQ  120
NALTDSERQR MSSQIERLTK EKEGLLQKLH RQEQERDVFE QQVKKLKDQL QHMEKRQKTM  180
DSYVSQVMET PELALNLSPC LPETNERKRR LPRMLEDNQA CVVVREEGST SASDETEHQV  240
EELESSIAVW ENLVSVSDDS CEGMAQSTGS MMILDVDDSS TCPESPPLSC IHLSIDTCPK  300
SPPSHKIIDI NSDVSKEQNI VAPAPPPPAT GVNDVFWQQL LTENPGSAEQ REVQPEKKED  360
KGEDPKIKLG TARININAPF LDNPYLSPHH LASLTQSTPC PPSLHSSAAA TASQDSTLLV  420
VLTSSHRLLQ TRLRPWSLRH LGDMHKIVSL TISDANLSST PISHSSIYPK NPPTLITQLS  480
NFEALKLSSE TISHEIPNNT SYLISLKNLF LRCHSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231110524129Heat shock factor protein 1
5d5v_B3e-231110524129Heat shock factor protein 1
5d5v_D3e-231110524129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131388001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132283.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLM4DA480.0M4DA48_BRARP; Uncharacterized protein
STRINGBra013358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]