PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131019001
Common NameGSBRNA2T00131019001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 240aa    MW: 26658.8 Da    PI: 7.0072
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131019001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.8e-19167201135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00131019001 167 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 201
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.1E-872239IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.464161197IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13161223No hitNo description
SMARTSM004012.7E-13161215IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14165199IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
CDDcd002023.89E-15167223No hitNo description
PfamPF003201.5E-16167201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEYVEAFLSD FSVDDLLDLS NTDAFVREKS SSSPREEERE KANSSSDQIT LLSPLDDILS  60
LPGSGPKLNA PVGDLEDLEW LSNFVDDSFS DYHDFPVNPV ASVEVQMQYV PVKPRSKRRR  120
TNGHLWSLES PYSSLYTAVS TEKKKRGRPK AETSSGDGVQ QQTRRCCSHC GVQKTPQWRM  180
GPLGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSTEIHSN SHRKVLELRL TKTADQGQG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131019001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-150AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599276.11e-177PREDICTED: GATA transcription factor 7
SwissprotO655151e-117GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A0D3A1J91e-176A0A0D3A1J9_BRAOL; GATA transcription factor
STRINGBo1g005750.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-95GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]