PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130521001
Common NameGSBRNA2T00130521001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 512aa    MW: 57363.8 Da    PI: 6.6188
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.7e-25186239155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+ Wt eLH++F+ av++  G ++A+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
  GSBRNA2T00130521001 186 KPRVIWTRELHNKFLAAVDHV-GFKNAVPKKILDLMNVDNLTRENVASHLQKFRL 239
                          79*******************.9*******************************8 PP
2Response_reg87.63.4e-29191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+++ +++l+++l + +y +v+++d+++ alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ +
  GSBRNA2T00130521001  19 VLAVDDDHTCLRILETLLHRCQY-HVTTTDKAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMNLPVIMLSAHSDPKYVMK 106
                          799********************.***************888888*******************87755.569***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +k Ga d+l Kp+ +eel +
  GSBRNA2T00130521001 107 GVKHGACDYLLKPVRIEELKN 127
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-3616138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.0E-4316140No hitNo description
SMARTSM004481.6E-3317129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.62918133IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2619127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.80E-2920132No hitNo description
PROSITE profilePS5129414.035183242IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-27183244IPR009057Homeodomain-like
SuperFamilySSF466892.78E-19185243IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-23186239IPR006447Myb domain, plants
PfamPF002491.3E-5191237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MTVEQGIEAV DQFPVGMRVL AVDDDHTCLR ILETLLHRCQ YHVTTTDKAQ TALELLRENK  60
NKFDLVISDV DMPDMDGFKL LELVGLEMNL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV  120
RIEELKNIWQ HVVRKSKLKK MKGIVTNGES EGNSDQNGVR ANRKCKDQLE EKDEEEQEQE  180
RGNDKKPRVI WTRELHNKFL AAVDHVGFKN AVPKKILDLM NVDNLTRENV ASHLQKFRLA  240
LKKITNEAKQ QANMAAANSH FMQMSSLKGF GSFHHSPIPL GSSQFHGGAA TMRHYPSNRT  300
FAGMFPHVSS SLPRNLHNDG GHMLQGTPFP PLENLHINSN NKAFPSFASQ QSSLLVAPSM  360
VLEGHQQSTS PSFSPHLEIN KRLEDWSNNI PQSNVHSEPD ALGWNMFGNS TNQTYFCRDT  420
DFGSSSAAHA DSLQMKQQHE NIFSPMTVAQ LLRSSSANEG LFMGQQKLED GFMASDAGSL  480
DDIVNSMMTQ FFECSRNSQA EFSEGDWVWV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-28185245464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130521001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535330.0AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621492.10.0PREDICTED: two-component response regulator ARR10-like isoform X1
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A0D3A2Q80.0A0A0D3A2Q8_BRAOL; Two-component response regulator
STRINGBo1g010830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  6. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  7. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  11. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  12. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  13. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]