PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127690001
Common NameGSBRNA2T00127690001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 450aa    MW: 50698.3 Da    PI: 8.3246
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127690001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.6e-102643021955
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          F+   ++yp   ++e LAk++gLt++qV++WF N R ++
  GSBRNA2T00127690001 264 FNHflHPYPRDLDKEMLAKQTGLTKSQVSNWFINARVRM 302
                          5544589*****************************986 PP
2BELL107.11.1e-34143213272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          rqelq k+akL+s++e+V++ Ykqy++q+qtvissFe+ aglgsa++Yt++Al++iS++Fr++kd+i+ qi
  GSBRNA2T00127690001 143 RQELQLKRAKLISMVEKVEQIYKQYHDQMQTVISSFEQEAGLGSANSYTHMALQTISKKFRAVKDMICLQI 213
                          79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.4E-4579211IPR006563POX domain
PfamPF075264.4E-3390209IPR006563POX domain
PROSITE profilePS5007112.179242305IPR001356Homeobox domain
SMARTSM003894.7E-10245309IPR001356Homeobox domain
CDDcd000863.73E-12245306No hitNo description
SuperFamilySSF466891.84E-17246312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-28248311IPR009057Homeodomain-like
PfamPF059205.0E-18262301IPR008422Homeobox KN domain
PROSITE patternPS000270280303IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAVFFQGETE MREPSSDLFM VNLNPSPDQT MTINAHNNHF YNLCFAPQQH PQRMNKYEVL  60
DHIEQANCSA ISTVSNGRVT QSFRALAPTY LRVAQELLNE IVHVGRGSRG AKQEQQMNNE  120
SATYGLYNGV GNINGGPKPG VCRQELQLKR AKLISMVEKV EQIYKQYHDQ MQTVISSFEQ  180
EAGLGSANSY THMALQTISK KFRAVKDMIC LQIKHINNLL GEKECEGVCL AKQLGKMPHN  240
HSNAWRPQRG LPETAVSVLR AWLFNHFLHP YPRDLDKEML AKQTGLTKSQ VSNWFINARV  300
RMWKPMVEEM YLEEMNIEES RKRGNLSEHG NKGSSSKQLC NNTTSDESSN WIIPAFHQGF  360
IKNETSMQNS FSSCSVMTFG KQHANQAKLI QFSGGFENYH AMVGNSVSLS LGMPHSCDQS  420
LNNIQFGSTS NETKISGKYP PSLTYQNID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16251309563Homeobox protein Meis2
3k2a_B2e-16251309563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127690001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634538.10.0PREDICTED: BEL1-like homeodomain protein 5
RefseqXP_013634539.10.0PREDICTED: BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLA0A0D3C2C20.0A0A0D3C2C2_BRAOL; Uncharacterized protein
STRINGBo4g162540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]