PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127507001
Common NameGSBRNA2T00127507001, LOC106414487
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 198aa    MW: 22665.3 Da    PI: 7.0151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30105163159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+++g++fpr+Y++C+ ++C vkkk+er++++p++v +tYeg+Hnh+
  GSBRNA2T00127507001 105 LDDGYKWRKYGKKPIRGNPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP 163
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2698165IPR003657WRKY domain
PROSITE profilePS5081129.195100165IPR003657WRKY domain
SuperFamilySSF1182902.88E-25102165IPR003657WRKY domain
SMARTSM007741.8E-31105164IPR003657WRKY domain
PfamPF031065.0E-22106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MIYPSNINPN FTDFGETFKF DDYDDDAFQM IMEGISLGDH SPTLSWTSSE KLLATEVTSP  60
LQTSLATSPI SFEIGDKDEK KKRKRHKDDQ VIHVFKTKSV KEIALDDGYK WRKYGKKPIR  120
GNPFPRHYHK CSNPNCIVKK KIERDTSNPE YVLTTYEGRH NHPSPFVVYC DSDDSDLTSL  180
NTLSFQTHTY SYSHSAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-241051651777Probable WRKY transcription factor 4
2lex_A6e-241051651777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931600.0KM593160.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710588.11e-146probable WRKY transcription factor 59
SwissprotQ9SJ098e-86WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A0A7RCK51e-138A0A0A7RCK5_BRAOC; WRKY92 protein (Fragment)
STRINGBra031221.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.14e-68WRKY DNA-binding protein 59
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]