PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127289001
Common NameGSBRNA2T00127289001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 499aa    MW: 55616 Da    PI: 4.916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127289001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-06148167626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ff++ G C++G++C+ +Hg
  GSBRNA2T00127289001 148 CKFFLQ-GRCRFGSSCRLSHG 167
                          ******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.089142169IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5142168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4147168IPR000571Zinc finger, CCCH-type
SMARTSM004431.6E-13305351IPR000467G-patch domain
PROSITE profilePS5017412.732307353IPR000467G-patch domain
PfamPF015852.5E-12307349IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPDL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNN AAAVKPERTD PASELELEPE RKDLDDGSKC RFRHIDGRWY  120
NGRIIGFEGS DSAKISFLTP TSESMMMCKF FLQGRCRFGS SCRLSHGVDV PISSLKNYEE  180
TEWKQSMVGS KIWAVSGSKY DVWRVGELES WDDKLQLGGV VFRDDGSSAK LGSDAMVLSE  240
YADDDGEDEE EEEEEEDGSD SGSEEESVSS DYDEEFPQGI GILGTTDQRR GGVQNETAIF  300
AKWENHTRGI ASKLMANMGY REGMGLGVSG QGRLDPIVAK VLPPKRSLDH ALEHIKNGEA  360
KSEKPKKKRS RGGKRKREKK FAEAARAAKQ EEESDLFSFI NNQERVNGSG ETAKKRQHVG  420
PVDRKALVAY EDEVKDLKIQ VKKLEEMVKR NKRDQIFSDA ATRRLKEVQK ALASTLAAQA  480
SASNAVESKE KEKKWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364379PKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127289001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599834.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
RefseqXP_013660746.10.0zinc finger CCCH domain-containing protein 22-like
RefseqXP_013692934.10.0zinc finger CCCH domain-containing protein 22-like
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A0D3DVK50.0A0A0D3DVK5_BRAOL; Uncharacterized protein
STRINGBo8g099560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]