PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127041001
Common NameGSBRNA2T00127041001, LOC106412054
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26937.2 Da    PI: 5.9522
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-173485556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +f++eq++ Le  Fe++  +  +++ + A++lgL+ rqV +WFqN+Ra++k
  GSBRNA2T00127041001 34 KRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 85
                         68*************************************************9 PP
2HD-ZIP_I/II118.63.5e-3832123293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +++r+s+eq+k+LE  Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y++l+++ + ++ke+++L ++l
  GSBRNA2T00127041001  32 NQKRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNNLASQFDIMKKEKQALVSQL 121
                          689*************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  GSBRNA2T00127041001 122 QR 123
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-161889IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-171987IPR009057Homeodomain-like
SMARTSM003894.6E-132491IPR001356Homeobox domain
PROSITE profilePS5007116.7462787IPR001356Homeobox domain
CDDcd000861.48E-123388No hitNo description
PfamPF000461.1E-143485IPR001356Homeobox domain
PRINTSPR000312.6E-55867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000312.6E-56783IPR000047Helix-turn-helix motif
PfamPF021838.6E-1687128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEGDAFNCC FSEINSGMSM NKNKKKMKKS NNQKRFSEEQ IKSLEVIFES ETRLEPRKKV  60
QVARELGLQP RQVAIWFQNK RARWKTKQLE KEYNILRANY NNLASQFDIM KKEKQALVSQ  120
LQRLNEEMHK SKEERRDEYC GEQRVALSST TRSENGKCEP EVRINQGIVL CNDDIKTEYF  180
GFEESNHVLM NIVEQADDSC LTSSDNWGGF NSDSILDQSS NYPWWDFWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.112810.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127041001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0006020.0KT000602.1 Brassica napus note R1 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708393.11e-170homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2761e-114ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A3P6FJ551e-169A0A3P6FJ55_BRAOL; Uncharacterized protein
STRINGBo8g097390.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-113homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]