PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00125531001

Common Name

GSBRNA2T00125531001, LOC106436488

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 329aa MW: 36130.6 Da PI: 8.0473

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00125531001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.2	7.6e-17	72	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le GSBRNA2T00125531001 72 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 158 7***********************************988888999*********************98..56668****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-23	71	160	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSLALVVH TPSVVGGSRN 60 GRSGGGGGRD DCWSEEATKV LIEAWGERFS EPGKGTLKQQ QWKEVAEVVN ESRQCKYLKT 120 DVQCKNRIDT VKKKYKQEKA KIASGDGPSK WVFFKKLESL IGAAGGNSTK APMGRRQGNK 180 GTVLKRGSDS MRWHFRKRSA SETESESDPE PEPEHSPPDS AESLPPPPPP SQLVSKRLKM 240 DELGGSGVGD VAKAILGFTE AYEKAETAKL KLMMELEKER MKFVKEMELQ RMQFLKTQME 300 MTQNDREEER SKPRINDDDV KNNGDVSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	197	KRGSDSMRWHFRKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4362	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269\|PubMed:19155348}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00125531001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352921	2e-84	AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732907.1	0.0	trihelix transcription factor ASIL1
Swissprot	Q9SYG2	1e-129	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	A0A078F4B5	0.0	A0A078F4B5_BRANA; BnaA05g14030D protein
STRING	Bra014370.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	2e-99	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Entrez Gene	106436488

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]