PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00123377001

Common Name

GSBRNA2T00123377001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 261aa MW: 29394.4 Da PI: 5.7511

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00123377001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.5	3.6e-11	130	221	2	82
EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.T CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.e 76 +k+lt sdv + +rl+l k+ +++ +gk +e+ +++++ ++g +++++k+ ++ + + vlt+GWk+Fv++ +L+ GSBRNA2T00123377001 130 KKQLTMSDVENGqCRLMLGKQQVQKKmlpllehseipQGK-TEGLDVSVYGPNGevQTMKFKM--WGED-TPVLTSGWKDFVDEYKLEkH 215 5899999999887********999***9996444.5778*****666666666..9997.679************978 PP T-EEEE CS B3 77 gDfvvF 82 +Df+++ GSBRNA2T00123377001 216 RDFLTI 221 999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.44E-13	129	225	No hit	No description
SMART	SM01019	1.8E-6	129	236	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-14	130	227	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-14	130	235	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVTSKEETTS VVIAQEDREA AETLIKLSQD TRYQPVEEED AAPSSTLSLQ QVSKAPQKSC 60 SCEKCKAKEK QHSKKDDKIS MESTKGKTEV DDTDETLMIL QEWSHTNPDP VKKLFNGAAD 120 VAELFSEPIK KQLTMSDVEN GQCRLMLGKQ QVQKKMLPLL EHSEIPQGKT EGLDVSVYGP 180 NGEVQTMKFK MWGEDTPVLT SGWKDFVDEY KLEKHRDFLT IWMFRHRVTR GICFAIDSTR 240 FSVTGPLSSR ISKSVFPNPN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00123377001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232572	0.0	AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141871.1	0.0	PREDICTED: putative B3 domain-containing protein At4g03170
Swissprot	Q9ZR14	3e-52	Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBL	A0A3P6CS82	0.0	A0A3P6CS82_BRACM; Uncharacterized protein
STRING	Bra017028.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	5e-53	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]