PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123143001
Common NameGSBRNA2T00123143001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 483aa    MW: 52981.7 Da    PI: 7.1115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123143001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.2e-17297344355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  GSBRNA2T00123143001 297 ETHNISERRRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 344
                          69*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-19292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.628294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-21297348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-18297348No hitNo description
PfamPF000101.8E-14297344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVVHRYKSYN FTKFQYEYSK RFVVVFVRGE DDIVELLWKS GHLVRSSQAQ RPSVPPPPPV  60
LRGSGSGGGS AEESAPLHLL LPPPLHSQPS DQSLFIREDE MASWLHHHPL GEEDEFLRSQ  120
LFYSGLVATP FTQPQGSVSL APPPASAIYT PTAAERPMGQ VIAERRAENF SRLRGNIQTS  180
GGVEVAAAPW VPVVVRDLTQ VGSSATPSSS APESCLTPAT VTSGVAQTFA VPRAVETVCA  240
IAGPSSSVVS SKTETETFQI QPATETEAAD ERKRKEREEP AEETGGSTSR KRSRAAETHN  300
ISERRRREKI NEKMKALQEL IPRCNKTDKA SMLEDAIEYV KSLQMQIQVC GGMMYNPNMQ  360
RFMPPSAMGM NRPPFIPLPG TAFPTPAHMP GPGPLYPAPR YPFPNIQAFD PSRVNLPSQQ  420
PDPVPNQSQF PGYLNPYSHF VGLQSMHQPP PPLQNQTTSQ MSFSQASSSK EPEDQDNKPT  480
GW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289306RKRSRAAETHNISERRRR
2302307ERRRRE
3303308RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123143001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550285.10.0transcription factor bHLH119-like
SwissprotQ9SVU71e-138BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A0D3A3N70.0A0A0D3A3N7_BRAOL; Uncharacterized protein
STRINGBo1g017090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-94bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]