PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00122233001 | ||||||||
Common Name | GSBRNA2T00122233001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 338aa MW: 38487.7 Da PI: 8.105 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 180 | 199 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ GSBRNA2T00122233001 180 FACSICSKTFTRYNNMQMHM 199 78*****************9 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 265 | 287 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ GSBRNA2T00122233001 265 FSCGKCGKALAVKGDWRTHEKNC 287 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.23E-9 | 160 | 203 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 180 | 199 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.17 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.596 | 180 | 207 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 228 | 260 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 190 | 265 | 285 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MNLDEKGLGF ESSSFLAWLR ASSNSSSPSV LFRTKTQDVV SRSYHQSQMK LERSLFLYQP 60 QEPLNTNTIQ CLPLLNKLME DESQASDEIK EEMDDDVVTL RIGLPTYHRG NSEEDDSDTT 120 SDHHQEKPIK REMTEDGVVM MKKRRTMKFQ QEMIDSDMGV CGKRFWIPSP AQIHVGPMQF 180 ACSICSKTFT RYNNMQMHMW GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH 240 PRAKPLKDFR TLQTHYKRKH GSKHFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK 300 HKRSLKDHIK SFGLGHSPHP SLSFDGFEED VECVTTE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00122233001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022547308.1 | 0.0 | zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 0.0 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A397Y5H8 | 0.0 | A0A397Y5H8_BRACM; Uncharacterized protein | ||||
STRING | Bra031621.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 0.0 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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