PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121470001
Common NameGSBRNA2T00121470001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 236aa    MW: 26411.5 Da    PI: 6.8946
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121470001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-19163197135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00121470001 163 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 197
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-842235IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-13157211IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.464157193IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13157219No hitNo description
Gene3DG3DSA:3.30.50.105.8E-14161195IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-16163197IPR000679Zinc finger, GATA-type
CDDcd002028.71E-15163219No hitNo description
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEYVEAFLSD FSVDDLLDLS STDAFVREKS SSSPREEERE KANSSSDQIT LLSPLEDILS  60
LPGSDSKLNV PVGDFEDLEW LSNFVDDSFP ESYLYGDFQV NPVETVEVQR QCIPVKPRSK  120
RRRTNGHLWS LESPYSFGKK KRGRPKAETS SGDGIQQQTR RCCSHCGVQK TPQWRMGPLG  180
AKTLCNACGV RFKSGRLLPE YRPACSPTFS TEIHSNSHRK VLELRLTKTA DQGQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120141RRRTNGHLWSLESPYSFGKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121470001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145707.11e-174PREDICTED: GATA transcription factor 7 isoform X1
SwissprotO655151e-114GATA7_ARATH; GATA transcription factor 7
TrEMBLM4D5B61e-173M4D5B6_BRARP; GATA transcription factor
STRINGBra011673.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-100GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]