PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114923001 | ||||||||
Common Name | GSBRNA2T00114923001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33112.2 Da PI: 4.4399 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 1.9e-13 | 16 | 101 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 d + s+rlvlp ++ ++ ++++ ++t +l+ ++g+ W vk ++++ + +++GW+ F +n+ +gDf+ F++dg+++f +v++ GSBRNA2T00114923001 16 QDLSLSQRLVLPSDYR-QY-YPTPLPQTAVLRKPEGNFWAVKW--GISPEEeISFGDGWSTFIAENDPLDGDFLQFSYDGSRSF--MVSI 99 45556699****9996.55.3566999****************..77777779*************************998888..**** PP E- CS B3 97 fr 98 fr GSBRNA2T00114923001 100 FR 101 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-16 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-15 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-12 | 7 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 9 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-10 | 9 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-11 | 14 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-5 | 195 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-4 | 195 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVFTPYPDFL IIYNSQDLSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP 60 EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD 120 DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR 180 IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE 240 GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114923001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619395.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g57720 | ||||
Swissprot | Q9FHH1 | 1e-110 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | A0A0D3ALD8 | 0.0 | A0A0D3ALD8_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g029120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 1e-104 | B3 family protein |
Publications ? help Back to Top | |||
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