PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113539001
Common NameGSBRNA2T00113539001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 273aa    MW: 30358.3 Da    PI: 8.0519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113539001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000161232323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+ksF++   L  H+r+H
  GSBRNA2T00113539001 12 CQVCKKSFPNGRALGGHMRSH 32
                         ********************9 PP
2zf-C2H213.20.00026246268123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC++Cg++F +   L  H ++H
  GSBRNA2T00113539001 246 YKCEICGRVFGSGQALGGHKKVH 268
                          9*********9999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-91033IPR007087Zinc finger, C2H2
SMARTSM003550.171032IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8471037IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-51135No hitNo description
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.6E-7203268No hitNo description
PROSITE profilePS501579.66205232IPR007087Zinc finger, C2H2
PfamPF139122.6E-10205228IPR007087Zinc finger, C2H2
SMARTSM003550.19205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094246268IPR007087Zinc finger, C2H2
PfamPF139128.4E-10246268IPR007087Zinc finger, C2H2
SMARTSM003550.012246268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMYSLLNETR NCQVCKKSFP NGRALGGHMR SHTRKISASN AESATGSTVP TLKTLTKLAA  60
NIRPNETVLM RSVHASEVGP EPDLKRGEGG QQIKGKRKFV VDVDECPSSL TAVEECALCL  120
VAMSKGQRPE NSQNWNAIDR LLATPNEKEE YTRKSIDIDS DDDDKDKYVA SNVRVLTKDI  180
DENEDEDDDD ETYLVEKENQ CKKKFTCDIC GKVLHSYQAL GGHRTSHKTK RLKICDKNGQ  240
AMVRNYKCEI CGRVFGSGQA LGGHKKVHYV FL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113539001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739579.10.0zinc finger protein ZAT1-like
RefseqXP_022573066.10.0zinc finger protein ZAT1-like
TrEMBLA0A398A5Z90.0A0A398A5Z9_BRACM; Uncharacterized protein
STRINGBra012953.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-65C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]