PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00113091001

Common Name

GSBRNA2T00113091001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 594aa MW: 66758.9 Da PI: 4.988

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00113091001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	43	1e-13	205	254	4	54
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +Wt + H +F+ a++ L G+++ Pk+ile+mk L+ +v S LQkY+ GSBRNA2T00113091001 205 NVWTRDRHMKFLAAISIL-GEKESRPKAILEIMKDSNLSQRQVGSYLQKYK 254 58**************.999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	17.076	19	131	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	8.2E-6	20	125	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	6.7E-9	20	151	No hit	No description
SuperFamily	SSF52172	6.64E-9	20	166	IPR011006	CheY-like superfamily
TIGRFAMs	TIGR01557	1.6E-12	205	254	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.53E-9	205	256	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-14	205	257	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MAENMVNLTK NIIPESTGVI LLIDHDAISV ASLIPMLKQR SHKDVMSVNG ASEAISVIEK 60 QKDIGLVIAN VELSDTNDFL TAMHHKEIPL ILIGTEIHIK ETSDLLTKRA CSCLKKPISE 120 NDVDNMFQLV LPNKRQEWEK INVAEKRENI VEERMKQMKA FRDHIKRQGT SQSSLLGRRP 180 LNKTFTSSQM YQKGKSIADV EGCKNVWTRD RHMKFLAAIS ILGEKESRPK AILEIMKDSN 240 LSQRQVGSYL QKYKFQVEII NKTLTRNEWK STDKTYEYPS DYVYPFKASN LAKTLIESNS 300 MWCSLRKRKS SSLSTVQYSF KRSAAEKKDR MPKFHIGEKS GLHRHSLSGS RVGASNLDAF 360 QKESAKICIS QSNPNPSQPS SYVLETNKNP LDMNQMGRVS FGENHGLSQD MIFNGTKSNH 420 LGLVSGETSH IETPLETDTN QMDWDWFSSD EAYAILEDLT VPETNINQVG LVPGETSFAA 480 LDNVTPPENN TNEIGLVPNQ EGNDDIPIED LISFGTDIIN EMDDLDAWLE NYNSFQGDVP 540 LPASCNDHDL AFTPTTSQHQ NIEAANPREA TEEGNHLDDD SDENLDWIDD IFA*

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MAENMVNLTK NIIPESTGVI LLIDHDAISV ASLIPMLKQR SHKDVMSVNG ASEAISVIEK  60
QKDIGLVIAN VELSDTNDFL TAMHHKEIPL ILIGTEIHIK ETSDLLTKRA CSCLKKPISE  120
NDVDNMFQLV LPNKRQEWEK INVAEKRENI VEERMKQMKA FRDHIKRQGT SQSSLLGRRP  180
LNKTFTSSQM YQKGKSIADV EGCKNVWTRD RHMKFLAAIS ILGEKESRPK AILEIMKDSN  240
LSQRQVGSYL QKYKFQVEII NKTLTRNEWK STDKTYEYPS DYVYPFKASN LAKTLIESNS  300
MWCSLRKRKS SSLSTVQYSF KRSAAEKKDR MPKFHIGEKS GLHRHSLSGS RVGASNLDAF  360
QKESAKICIS QSNPNPSQPS SYVLETNKNP LDMNQMGRVS FGENHGLSQD MIFNGTKSNH  420
LGLVSGETSH IETPLETDTN QMDWDWFSSD EAYAILEDLT VPETNINQVG LVPGETSFAA  480
LDNVTPPENN TNEIGLVPNQ EGNDDIPIED LISFGTDIIN EMDDLDAWLE NYNSFQGDVP  540
LPASCNDHDL AFTPTTSQHQ NIEAANPREA TEEGNHLDDD SDENLDWIDD IFA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00113091001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189489	0.0	AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013589599.1	0.0	PREDICTED: putative two-component response regulator-like APRR6
Refseq	XP_013699703.1	0.0	putative two-component response regulator-like APRR6
Refseq	XP_022569471.1	0.0	putative two-component response regulator-like APRR6
TrEMBL	A0A3P6GUB7	0.0	A0A3P6GUB7_BRAOL; Uncharacterized protein
STRING	Bo6g106630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13685	14	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	1e-113	pseudo-response regulator 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]