PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112454001
Common NameGSBRNA2T00112454001, LOC106356501
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 328aa    MW: 37693.4 Da    PI: 8.8953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112454001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1823110198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv      ++s++lv+p  f+ ++ ++k+ +k+++l de gr W+v+     k g +v+++GW++F++++ L+ gDf++F+++g+s+f
  GSBRNA2T00112454001  23 FFKVY--LPEFSSHQLVIPQAFI-NI-LDKPLPKKVVLVDEIGRLWDVET----KIGVVVFRQGWEKFANEHSLEFGDFLLFRYNGESRF 104
                          77877..78999***********.44.56789******************....5567***************************99999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v++f 
  GSBRNA2T00112454001 105 --DVTIFA 110
                          ..888876 PP
2B340.93.7e-13218310898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                            v+++++l +p +f++++g++ ee++++ l de+g++W +k+  +k++++ ++  + W  F+++++L+    ++F+++  ++ ++ + +
  GSBRNA2T00112454001 218 IAVGSLRLLEIPTTFLKANGIELEEGQDIELCDENGKKWPLKI--EKHGRGcIFSYDSWLCFCESHNLRNPNKCLFEFIvsSNgTCSQIL 305
                          56889999***********98889999****************..999999555559********************6533556777778 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v++fr
  GSBRNA2T00112454001 306 VRIFR 310
                          88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2220114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.57921112IPR003340B3 DNA binding domain
SMARTSM010199.3E-1823112IPR003340B3 DNA binding domain
CDDcd100179.22E-1923109No hitNo description
PfamPF023623.4E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14207310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15207310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955211312IPR003340B3 DNA binding domain
SMARTSM010191.5E-10214312IPR003340B3 DNA binding domain
PfamPF023621.1E-10218311IPR003340B3 DNA binding domain
CDDcd100171.25E-10220310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVETSEKTPS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKKVVLVDEI  60
GRLWDVETKI GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR  120
FRVSVEKEPV LVKPVGISIK PEPWEDCGKR VMQNRKRVSV REEASVFGEI EPVHQRNTRK  180
KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL  240
EEGQDIELCD ENGKKWPLKI EKHGRGCIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT  300
CSQILVRIFR GTLLTTATKS GYHVLPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112454001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651702.10.0putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-123Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A3P6BQY10.0A0A3P6BQY1_BRACM; Uncharacterized protein
STRINGBra012121.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]