PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104691001 | ||||||||
Common Name | GSBRNA2T00104691001, LOC106383114, LOC106383131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21259.1 Da PI: 9.8459 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 252.4 | 8e-78 | 2 | 165 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee. 90 +++ ss+++Cyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ q+ + + ++++l+++++++++ +++e GSBRNA2T00104691001 2 SIDLSSDRLCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLQQSPPTPP--------IHQDLQQHKQQITTSITRKEy 83 67789**********************************************9999988775........555555555555555555540 PP YABBY 91 ...sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s s+++ s +lsen d+e+pr+pp irPPekrqr Psaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl GSBRNA2T00104691001 84 gssSRSSNHFSATLSENVDREAPRMPP-IRPPEKRQRLPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 165 00045555555566***********99.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.5E-72 | 6 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.23E-7 | 110 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 113 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSIDLSSDRL CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLQQSPPT 60 PPIHQDLQQH KQQITTSITR KEYGSSSRSS NHFSATLSEN VDREAPRMPP IRPPEKRQRL 120 PSAYNRFIKE EIQRIKAGNP EISHREAFST AAKNWAHFPH IHFGLKLDGN KKGKQLDQSV 180 AGQKSNGYY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104691001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 0.0 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013678687.1 | 1e-141 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_013678688.1 | 1e-141 | putative axial regulator YABBY 2 isoform X2 | ||||
Refseq | XP_013678718.1 | 1e-141 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_013678719.1 | 1e-141 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 1e-117 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A3P6GHK0 | 1e-139 | A0A3P6GHK0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g055830.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-120 | YABBY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106383114 | 106383131 |
Publications ? help Back to Top | |||
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