PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099817001 | ||||||||
Common Name | GSBRNA2T00099817001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 286aa MW: 31667.3 Da PI: 8.8358 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.8e-30 | 160 | 218 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh GSBRNA2T00099817001 160 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 218 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-29 | 153 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-25 | 157 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-34 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 161 | 218 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.97 | 162 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDCSSFLDLN TNPFDRNFPA KLPKKEVKVS TSADLERKQN ASELREELNR VNSENKKLTE 60 MLATVWENYH ALHHHLEKLQ SRKSPEMDQI EQPTKKRKQD SYELLGLGNG LSGGKTENSS 120 SNEDHYQVLS CKRPVTDSFS KANVSTVYVP SDSSDTSLTV KDGYQWRKYG QKVTRDNPSP 180 RAYFRCSFAP SCPVKKKVQR SAEDPSILVA TYEGTHNHLG PNGSEGDVTS QVGSSTVTLN 240 LVRSGQGTMQ EVLVQQMASS LTKDSKFTAA LAAAISGRLM EQSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 160 | 223 | 14 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28164 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099817001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ210288 | 0.0 | FJ210288.1 Brassica napus cultivar Westar WRKY transcription factor 18 (WRKY18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593197.1 | 0.0 | PREDICTED: WRKY transcription factor 18-like | ||||
Swissprot | Q9C5T4 | 1e-154 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | C5H8V7 | 0.0 | C5H8V7_BRANA; WRKY transcription factor 18 | ||||
STRING | Bo7g115410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-151 | WRKY DNA-binding protein 18 |