PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099070001
Common NameGSBRNA2T00099070001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 337aa    MW: 38456.2 Da    PI: 5.8438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099070001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51111391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPt+eel+ +yL+kk+++ k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat+ g+Wkatg
  GSBRNA2T00099070001  11 VPPGFRFHPTEEELLEYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATG 99 
                          69****************************.9***************962433332455******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk ++s +g  +g++ktLvfykgrap+g+k+dW+mheyrl
  GSBRNA2T00099070001 100 RDKIIYS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                          *******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-578176IPR003441NAC domain
PROSITE profilePS5100555.0311176IPR003441NAC domain
PfamPF023651.2E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLEYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD ENVLASSSNH DDEVSVETCE VIGGDEGWVV CRVFMKKSLC  180
KTVISSPPRS VKTSSFNEET IEEIFKVMGQ SCKEEIIVDP FLKLPNLECL NNTVASYQRL  240
MDDQVHNYHV PSFGTSWVTL DRLVASQPNG PNSYSIPAVD EIPQSPLHGL NRPGLYNTGL  300
TQDYYTTEMD IWNNTDFGRT TTSSSNPWFH ISNSSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-47817814167NO APICAL MERISTEM PROTEIN
1ut4_B4e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_A4e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_B4e-47817814167NO APICAL MERISTEM PROTEIN
3swm_A4e-47817817170NAC domain-containing protein 19
3swm_B4e-47817817170NAC domain-containing protein 19
3swm_C4e-47817817170NAC domain-containing protein 19
3swm_D4e-47817817170NAC domain-containing protein 19
3swp_A4e-47817817170NAC domain-containing protein 19
3swp_B4e-47817817170NAC domain-containing protein 19
3swp_C4e-47817817170NAC domain-containing protein 19
3swp_D4e-47817817170NAC domain-containing protein 19
4dul_A4e-47817814167NAC domain-containing protein 19
4dul_B4e-47817814167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099070001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104354.10.0PREDICTED: NAC domain-containing protein 66-like
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A3P6BF000.0A0A3P6BF00_BRACM; Uncharacterized protein
TrEMBLM4CGZ50.0M4CGZ5_BRARP; Uncharacterized protein
STRINGBra003478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]