PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098757001
Common NameGSBRNA2T00098757001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 316aa    MW: 34931.9 Da    PI: 7.1913
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098757001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17228261134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  GSBRNA2T00098757001 228 CMHCEITKTPQWRLGPMGPKTLCNACGVRYKSGR 261
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.6E-871315IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635222258IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-15222272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14226259IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15226285No hitNo description
CDDcd002021.17E-13227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003203.2E-15228261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MIGQSFFPED LDCGNFFDNM DDILDFPGGD IDVGFDIGES DSFPNIWTTH HDTWPAASDP  60
LFSSNTNTNS DSSPELYVPF EDIVKVERPP SLVEKKEDSF STNMDSSSSH STFRSSSPVS  120
VLESSSSSSQ TTNTTSLVLP GKQGRPRTKR PRPHVQDKDG VKDIVDSCLI VRIPKQFVSD  180
HSKMISKKKK KKKAKVTSSS SSSGIDFEVN GNNNVDSYSS EQNPVRKCMH CEITKTPQWR  240
LGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFTPALHS NSHKKVAEMR SKRCKDGSYT  300
TQENDMQDLI PNTLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KRPRP
2186192KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191770.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098757001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896170.0AC189617.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103933.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-153GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A397YLN50.0A0A397YLN5_BRACM; GATA transcription factor
STRINGBra003194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-128GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]