PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00096829001 | ||||||||
Common Name | GSBRNA2T00096829001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24250.8 Da PI: 6.0554 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F + L H +H GSBRNA2T00096829001 139 FICDVCGKVFGSYQALGGHRTSH 161 89********9999998888776 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.3e-05 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H++tH GSBRNA2T00096829001 190 HQCGVCGREFESGQALGGHMKTH 212 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-8 | 137 | 212 | No hit | No description |
Pfam | PF13912 | 5.2E-12 | 139 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.408 | 139 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 139 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 141 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 186 | 212 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-10 | 189 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 190 | 212 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 190 | 214 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 212 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMSESASGST LPSLETSNNE TRCWGTRSKE RRRCTSNKRR GKDDPGLILV ALSKGQRPEN 60 SQNWNAIDRL LAAPNGKEEY YETDLDSDDD NKEVKYKSVA ELLTQNVETL TEDIDEDDED 120 NDADGTNLVT REKKCKKEFI CDVCGKVFGS YQALGGHRTS HKCKRLKICD KNDQDRELVP 180 NKKNDQDRRH QCGVCGREFE SGQALGGHMK THYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00096829001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232542 | 0.0 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013617951.1 | 1e-121 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A078JX16 | 1e-157 | A0A078JX16_BRANA; BnaUnng03680D protein | ||||
STRING | Bo2g161550.1 | 1e-120 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 2e-26 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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