PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096312001
Common NameGSBRNA2T00096312001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 346aa    MW: 38501 Da    PI: 4.4541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096312001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30160218158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  GSBRNA2T00096312001 160 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 218
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28153219IPR003657WRKY domain
SuperFamilySSF1182904.58E-25157219IPR003657WRKY domain
SMARTSM007744.7E-34160220IPR003657WRKY domain
PfamPF031061.5E-24161218IPR003657WRKY domain
PROSITE profilePS5081125.97162221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDCSSFLDLN TNPFDHNFPA KLPKEEVKVS TSSDLERKQN ASELREELNR VNSENKKLTE  60
MLAAVWENYY ALHHHLEKLQ SRKSPEMDQI EQPTKRRKQD SYELLGFGNG LSGGKTENSS  120
SNEDHHQLLS CKRPVTDSFN KANVSTVYVP SDSSDTSLTV KDGYQWRKYG QKVTRDNPSP  180
RAYFRCSFAP SCPVKKKVQR SAEDPSILVA TYEGTHNHLG PNGSEGDVTS QVGSSTVTLD  240
LVHSGQGTMQ EVLVRQMASS LTKDSKFTAA LAAAISGSGE EPPLKEEQIN EVEEPEQEID  300
DILLIDPHNH EYEDLTDDAT DEAVEDEFNK NDDVSSDDEN VDVSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-201602231476WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096312001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300250.0KF430025.1 Brassica rapa WRKY transcription factor 1 (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288879.10.0WRKY transcription factor 18-like
RefseqXP_013716570.10.0WRKY transcription factor 18-like
RefseqXP_013719512.10.0WRKY transcription factor 18-like
RefseqXP_022572738.10.0WRKY transcription factor 18-like
RefseqXP_022573757.10.0WRKY transcription factor 18-like
SwissprotQ9C5T41e-149WRK18_ARATH; WRKY transcription factor 18
TrEMBLA0A078JX600.0A0A078JX60_BRANA; BnaAnng32610D protein
STRINGBra023983.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-150WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Keates SE,Kostman TA,Anderson JD,Bailey BA
    Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
    Plant Physiol., 2003. 132(3): p. 1610-22
    [PMID:12857840]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
    AthaMap: from in silico data to real transcription factor binding sites.
    In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
    [PMID:16922688]
  4. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  7. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  8. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  9. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  10. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  11. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]