PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00096312001 | ||||||||
Common Name | GSBRNA2T00096312001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 38501 Da PI: 4.4541 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 3.9e-30 | 160 | 218 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh GSBRNA2T00096312001 160 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 218 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-28 | 153 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-25 | 157 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-34 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 161 | 218 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.97 | 162 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDCSSFLDLN TNPFDHNFPA KLPKEEVKVS TSSDLERKQN ASELREELNR VNSENKKLTE 60 MLAAVWENYY ALHHHLEKLQ SRKSPEMDQI EQPTKRRKQD SYELLGFGNG LSGGKTENSS 120 SNEDHHQLLS CKRPVTDSFN KANVSTVYVP SDSSDTSLTV KDGYQWRKYG QKVTRDNPSP 180 RAYFRCSFAP SCPVKKKVQR SAEDPSILVA TYEGTHNHLG PNGSEGDVTS QVGSSTVTLD 240 LVHSGQGTMQ EVLVRQMASS LTKDSKFTAA LAAAISGSGE EPPLKEEQIN EVEEPEQEID 300 DILLIDPHNH EYEDLTDDAT DEAVEDEFNK NDDVSSDDEN VDVSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-20 | 160 | 223 | 14 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00096312001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430025 | 0.0 | KF430025.1 Brassica rapa WRKY transcription factor 1 (WRKY1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288879.1 | 0.0 | WRKY transcription factor 18-like | ||||
Refseq | XP_013716570.1 | 0.0 | WRKY transcription factor 18-like | ||||
Refseq | XP_013719512.1 | 0.0 | WRKY transcription factor 18-like | ||||
Refseq | XP_022572738.1 | 0.0 | WRKY transcription factor 18-like | ||||
Refseq | XP_022573757.1 | 0.0 | WRKY transcription factor 18-like | ||||
Swissprot | Q9C5T4 | 1e-149 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A078JX60 | 0.0 | A0A078JX60_BRANA; BnaAnng32610D protein | ||||
STRING | Bra023983.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-150 | WRKY DNA-binding protein 18 |