PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092812001
Common NameGSBRNA2T00092812001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 385aa    MW: 45034.8 Da    PI: 7.1882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092812001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-10108133126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++Cr +++tG C +G++C F+H+
  GSBRNA2T00092812001 108 PGERICRSYLQTGLCDHGSNCLFNHP 133
                          5789*********************9 PP
2zf-CCCH23.78.6e-08134153525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           C+ff+r G+C  G+ CkF+H
  GSBRNA2T00092812001 134 TCKFFRR-GFCTDGSACKFIH 153
                          6**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-4107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.972107128IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5110133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5111132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5134154IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-6134153IPR000571Zinc finger, CCCH-type
SMARTSM003562.7135155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4135155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
GDVLIFVLDS QERDLDSRSR KSDVTTGRRH KRDPGTWAEK REPDLITDHK ESYVVDTLKQ  60
QRLGDVEMQQ QRSHETESKN WATNLGWERS EPKTISDERI QNGYQVRPGE RICRSYLQTG  120
LCDHGSNCLF NHPTCKFFRR GFCTDGSACK FIHAKNNEAP RLPNNTMRQP LPSDVKILPE  180
FSHPKDRDGA ETMRQGSGRH ETESAYRPDE KKCNSSLSQI SVVGMVAGSS SYKEKEQRQA  240
HDDPLELRDN TEWQRGQAQE NVHEHRPRDI TDCQRYYEMG RRDAQEIVQQ HRQRDITEFL  300
RYFEMGRRDA QVIVQQHRQR EASGRQRYLE EEKSEAQAND QEQRLMVTTL DGRFDERRHE  360
TESSSMAEKR VTLTKYQLFI SLLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092812001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556231.10.0putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A078JSP30.0A0A078JSP3_BRANA; BnaCnng65580D protein (Fragment)
STRINGBo5g059850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1879646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.16e-18C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]