PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092596001
Common NameGSBRNA2T00092596001, LOC106365322
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 166aa    MW: 18406.9 Da    PI: 10.5561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092596001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1982136155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  GSBRNA2T00092596001  82 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 136
                          59********.**********54433367**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.5E-361163IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.06E-2382143No hitNo description
PROSITE profilePS5103221.54983144IPR001471AP2/ERF domain
SMARTSM003801.2E-3083150IPR001471AP2/ERF domain
PfamPF008472.2E-1383136IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1983145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2783144IPR001471AP2/ERF domain
PRINTSPR003672.3E-118495IPR001471AP2/ERF domain
PRINTSPR003672.3E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EEEAEQLSEA SQARRRGKRL VKEIVIDSSD SDNRLDVCKT  60
RFKIRIPPEF LKAATAEKKN KKKFRGVRQR PWGKWAAEIR CGRALKGRRD RLWLGTFDTA  120
EEAALAYDNA AVQLIGPHAP TNFSFPAENQ EVKMVAGASA VARGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16831431471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.274520.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092596001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894010.0AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660221.11e-117ethylene-responsive transcription factor ERF070 isoform X1
SwissprotQ9C9953e-87ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A078IJG71e-116A0A078IJG7_BRANA; BnaCnng17120D protein
TrEMBLA0A3P6FXY11e-116A0A3P6FXY1_BRAOL; Uncharacterized protein
STRINGBo6g094430.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.14e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]