PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090623001
Common NameGSBRNA2T00090623001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1006aa    MW: 113085 Da    PI: 7.2185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090623001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.1e-12291071297
                          HTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++ l +p  f+ +h   + + +  kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++f
  GSBRNA2T00090623001  29 HTH-LNIPVAFFLKHvqeS-NDHI-KTAKLTTdASAKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 107
                          444.99*********9742.3333.45555553999*******..555....5***********************9998888..88776 PP
2B3629.9e-20168258595
                          -..-HHHHTT-EE--HHH.HTT---..--SE.EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeeskt.ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+s+rl++p  fa+++g+++ ++k+ ++l +e+grsW+++++y+k + +++ + GW++F+ +ng+k g   +Fkl++r ++ lv
  GSBRNA2T00090623001 168 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEiIVLLNEEGRSWNLNMTYNKVGMQTFVRPGWRRFCAENGMKKGHHYTFKLVRR-SAPLV 256
                          567899999*************777666555167889********************************************985.44455 PP

                          EE CS
                   B3  94 vk 95 
                          ++
  GSBRNA2T00090623001 257 IR 258
                          55 PP
3B357.32.9e-18284372797
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +s++l  + l+l ++f++++g++k + +++tl++e+g sW + l++  +s+r++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ +
  GSBRNA2T00090623001 284 SSNSLIMDKLYLQRHFVTANGLEK-GLIEITLKNEWGGSWILGLKHYESSNRTFLGPGWKTFCQLNGIKAEDSFMFKLVE-TGDKPVLLL 371
                          566666789***********9997.669*************************************************998.555677777 PP

                          E CS
                   B3  97 f 97 
                          +
  GSBRNA2T00090623001 372 C 372
                          6 PP
4B343.46.2e-14449536390
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                             ++ ++lk++ l+lp  f++ + ++  ++++++l  ++g ++  v l  +k+ g++ ++kGW+eF++a+g+k+g+++ ++l ++ +e+
  GSBRNA2T00090623001 449 RLSLTQSALKTSVLYLPLAFTRMNCIN--KPIKIMLLGKDGvKKHVVDLLKNKSTGAMRFGKGWREFCDAHGVKVGESFQLELFREdEEA 536
                          5567889999999***********877..6779********8889999988999999*************************98764544 PP
5B3672.6e-21632724598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++++l+ +rl++pk fa ++g+++ ++k+++l +e+grsW+++++y+ ++ +++ + GW++F+ +ng+++g  ++F+l++ +++ + +
  GSBRNA2T00090623001 632 HVTPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGRSWNLNITYNESGMHTFVRPGWRRFCAENGMNQGHHCTFELVR-KSAPPIL 720
                          5788999999*********************************************************************998.7777777 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          ++ r
  GSBRNA2T00090623001 721 RLSR 724
                          7766 PP
6B3604.2e-19746834697
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++l+++ l++ +kf++++g+k  +  +++l++e g sW++ l+y  + ++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+ 
  GSBRNA2T00090623001 746 VSSNSLRKDKLYIQRKFVNANGLK--GLSEIVLKNELGGSWNLGLRYYESLNHTYLGPGWKTFCQVNGIKTGDSFMFKVVE-TGDKPVLL 832
                          57899999*************988..4559************************************************887.66667877 PP

                          EE CS
                   B3  96 vf 97 
                          ++
  GSBRNA2T00090623001 833 LC 834
                          77 PP
7B348.51.5e-159051003198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86  
                           f+k ++++ +lk+  l+lp +f++ +g++k++  ++tl d++g + +v    +++++   + l+kGW+eF++a+g+k+g +++++l++
  GSBRNA2T00090623001  905 FVKLTLTPRALKTYKLMLPLDFTRVNGINKPG--KITLLDKDGVKKQVVDLLDQNRNIgiMRLGKGWREFCDAHGVKVGQSFLLELIW 990 
                           889999999******************99766..7********6666665565555445699*************************9 PP

                           S.SEE..EEEEE- CS
                   B3   87 r.sefelvvkvfr 98  
                           + +e+ +v+k++ 
  GSBRNA2T00090623001  991 EdEEAIPVLKFCT 1003
                           9899989988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1814117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-2014112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.95517110IPR003340B3 DNA binding domain
CDDcd100171.58E-1218107No hitNo description
SMARTSM010196.1E-1820110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19157254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17160259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.551164263IPR003340B3 DNA binding domain
SMARTSM010197.8E-24165263IPR003340B3 DNA binding domain
CDDcd100171.26E-16165259No hitNo description
PfamPF023625.6E-18168259IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15273374IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.521278374IPR003340B3 DNA binding domain
SMARTSM010198.3E-18279375IPR003340B3 DNA binding domain
PfamPF023628.4E-17283373IPR003340B3 DNA binding domain
CDDcd100171.16E-13284372No hitNo description
SuperFamilySSF1019361.49E-15291375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-16439566IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-17443562IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-13445553No hitNo description
PROSITE profilePS5086311.152447543IPR003340B3 DNA binding domain
PfamPF023622.4E-12447536IPR003340B3 DNA binding domain
SMARTSM010194.4E-17447543IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21621718IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-20622720IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.762628726IPR003340B3 DNA binding domain
CDDcd100174.65E-17628715No hitNo description
SMARTSM010191.6E-27629726IPR003340B3 DNA binding domain
PfamPF023622.2E-19632725IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649741836IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16742835IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-20742837IPR003340B3 DNA binding domain
PfamPF023623.2E-17746834IPR003340B3 DNA binding domain
CDDcd100171.31E-13747834No hitNo description
SuperFamilySSF1019364.9E-17747837IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-158981003IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-169011002IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-13904994No hitNo description
PfamPF023627.7E-159051003IPR003340B3 DNA binding domain
PROSITE profilePS5086311.9849051004IPR003340B3 DNA binding domain
SMARTSM010192.1E-219051005IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MKCSTMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHVQESNDHI KTAKLTTDAS  60
AKTWLVKVDG VRLTDGWEDF AVGHDLRIGD ITIFRHEGEM VFHVTAFGPS CCDIQYTSAS  120
SHNINDDSQD QTNNAVTGNS SGEKRKRVKK NPRTKEDSSS DHSQFVAHVS PSSLSSDRLY  180
IPTGFARSNG LDNMSGKEII VLLNEEGRSW NLNMTYNKVG MQTFVRPGWR RFCAENGMKK  240
GHHYTFKLVR RSAPLVIRLS HAEHEPELAP ESSLHHSYFV GSVSSNSLIM DKLYLQRHFV  300
TANGLEKGLI EITLKNEWGG SWILGLKHYE SSNRTFLGPG WKTFCQLNGI KAEDSFMFKL  360
VETGDKPVLL LCTSNRGKTP LDCSEDRDDV DSLSSDTSSE DDSKEESQES DKESIEDEDR  420
SQQCIVMEKE NNSLRCICSS PYSKHRFVRL SLTQSALKTS VLYLPLAFTR MNCINKPIKI  480
MLLGKDGVKK HVVDLLKNKS TGAMRFGKGW REFCDAHGVK VGESFQLELF REDEEAIPVL  540
KHEGKMVFHV TAFGPSLCEF QYTSASSHNI NDVSDDDHTN KTGKLLFYEM YSNSAEKDAI  600
TGNSSGEKRK RVKKNPRTKE ESSSDHSHFV AHVTPSSLSC DRLYVPKGFA MSNGLDNMSG  660
KEIVLLNEEG RSWNLNITYN ESGMHTFVRP GWRRFCAENG MNQGHHCTFE LVRKSAPPIL  720
RLSRAEHDPK PAPESSLHHS NYVGSVSSNS LRKDKLYIQR KFVNANGLKG LSEIVLKNEL  780
GGSWNLGLRY YESLNHTYLG PGWKTFCQVN GIKTGDSFMF KVVETGDKPV LLLCTTNRGK  840
TPLDCPEDSN DVNSLSSDTG SGESQESEEE SLEDDDSSSE EIFEMVKREN SSRCRASSSY  900
SQDRFVKLTL TPRALKTYKL MLPLDFTRVN GINKPGKITL LDKDGVKKQV VDLLDQNRNI  960
GIMRLGKGWR EFCDAHGVKV GQSFLLELIW EDEEAIPVLK FCTKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090623001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115392.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X1
SwissprotQ84WP30.0REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078FP000.0A0A078FP00_BRANA; BnaA09g29140D protein
STRINGBra024697.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-136B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]