PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089465001

Common Name

GSBRNA2T00089465001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 322aa MW: 35408.9 Da PI: 5.2951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089465001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.2e-06	276	304	10	32
HHHHHHHHHHHHHHHCTSCCC........ CS HLH 10 rrRRdriNsafeeLrellPkas......k 32 r+RR+riN+++ L+ l+P+ + GSBRNA2T00089465001 276 RKRRERINERLRILQNLVPNGTkvktcyD 304 9******************9533555552 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.083	266	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-6	267	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-4	271	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.22E-4	275	300	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLT SYDHPGTGSS SGTASADHQG LCWSLGSHHN 60 HLTIMPEASS FCFSGESSSY SEYYAVAPPE VRENNNGSMD FDMVDVTINT NSYLVGEETS 120 ECDVEKYSSG KTRLPLGAVL ETHDDVESML QPEISVTTTD HQKYLTGSKK RSRATSADKN 180 KKAKVGKRGQ KSLEMSGDDR NGGEEEEGEK VKKRKTGPMM SRQNSSITLC SEDESHCASQ 240 DVGGEDEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVK 300 TCYDSSHTRN DSKILSIYLI Y*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089465001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013654861.1	0.0	transcription factor bHLH85-like
Swissprot	Q84WK0	1e-158	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A078IEG7	0.0	A0A078IEG7_BRANA; BnaA08g11400D protein
STRING	Bra034587.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-130	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]