PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083073001
Common NameGSBRNA2T00083073001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 373aa    MW: 42153.1 Da    PI: 6.9626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083073001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07215237123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  GSBRNA2T00083073001 215 HYCQICGKGFKRDANLRMHMRAH 237
                          68*******************99 PP
2zf-C2H212.30.00051337352621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L++H +
  GSBRNA2T00083073001 337 CGTRFSRKDKLTSHVS 352
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6213240No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6215242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632215242IPR007087Zinc finger, C2H2
PfamPF128740.0024216235No hitNo description
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SMARTSM00355220267300IPR015880Zinc finger, C2H2-like
SMARTSM0035555305327IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-4327353IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355310333357IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNQRGLMMNT GEWSMSCCSE TNSSSTIYTN SMAAATRSSG DDISLSLLFN LSTIQDKVHE  60
IQSLVNFFMI SPSNNNQSSE STSSLAAANV ESLVQDIITA ASSMMLTCQS LQISTGDNSN  120
IDTSQTTDGT FMEFSQDFDP DHDFVQESST NLLESSSNLL GVQEREHDSL IDQSLDWHSI  180
QTTNPKTDHH HFKSRTGNYE IVELSVEDLL AKYTHYCQIC GKGFKRDANL RMHMRAHGDE  240
YKTREALINP TSRDKNVEYS SLTRHYYSCP QHGCRWNQRH DKFQPLKSVI CAKNHYKRSH  300
CPKIYMCRRC NVKHFSVLSD LRTHEKHCGD IKWVCSCGTR FSRKDKLTSH VSLFSGHSPA  360
HEPLPQPPMI SL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083073001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665870.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-172STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078JQN10.0A0A078JQN1_BRANA; BnaCnng61920D protein
STRINGBo9g148110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-158C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]