PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079931001
Common NameGSBRNA2T00079931001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 502aa    MW: 59846.5 Da    PI: 8.538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079931001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-08353374526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+++ G+C +G+ C F H+
  GSBRNA2T00079931001 353 VCHFYLKKGWCGFGSDCVFKHP 374
                          6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-4342373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6346379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108348376IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-6353374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MADALDNQQE VQRSGSNETE SRSNEETKGQ TLDMRPSGSG TRSVEKAVVR YDRDTRFRDA  60
NREATPDRDP IAHAIYWEKK VQELRVRNAE MKQRRANETI QKQRLRNAEM QQRRANKTES  120
ISIEETKGET VDMKPSGPWE KAVVRYDRDT RFWEDKMQQQ RLGDVEMQQR RANETESRSI  180
EEPEGETVDT RPSGSGEKVG QTRPSGSRRW SPVVRYNRDT RSWEENREYL ESSGRENEAV  240
QIRDQNETYI QQRQRDDEMQ QRRSRETESI FFQQQKNREY ECSGSRMNEA GPIRDPRILE  300
NLRDFGMQQR RRHETEWRFQ KQQNRAEAPD LGYKRRRFEQ EQYPTRPRIK KGVCHFYLKK  360
GWCGFGSDCV FKHPTPSWRF DERRYETEVP ENMARTVYGR ESGSTWRFDE ERKSGYGEAQ  420
ENNIWWQRRE APENVREQRD STAGWLSYDE RRINPATREI LMRPARRMEQ RDREREVRNE  480
GAHNSESSPQ LGTEREESDG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079931001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545243.10.0trichohyalin-like
TrEMBLA0A078I4040.0A0A078I404_BRANA; BnaA07g07830D protein
STRINGBra030151.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2341133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29570.11e-08C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]