PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00078706001 | ||||||||
Common Name | GSBRNA2T00078706001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 517aa MW: 57563.1 Da PI: 4.3148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 3e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgk GSBRNA2T00078706001 9 LAPGFRFHPTDEELVRYYLKRKVCNKPFNF-DAISVADVYKSEPWDLPdKsKLKGRDLEWYFFSMLDKKYSNGSKTNRATERGYWKTTGK 97 579**************************9.99**************95346777777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+e+ + ++++vg+kktLv++kgrap+ge+++Wvmheyrl GSBRNA2T00078706001 98 DREIRN-GTRAVGMKKTLVYHKGRAPRGERSNWVMHEYRL 136 *****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.018 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MGRGSATSLA PGFRFHPTDE ELVRYYLKRK VCNKPFNFDA ISVADVYKSE PWDLPDKSKL 60 KGRDLEWYFF SMLDKKYSNG SKTNRATERG YWKTTGKDRE IRNGTRAVGM KKTLVYHKGR 120 APRGERSNWV MHEYRLTDDE LKIAGAPQDA FVLCRVFQKC GTGDKYGAPC LEEEWEEDTM 180 TFVPEQEALC EGFGVDGDDV YLDIDEKPED LVVCDAIPVQ TNYCHGESSN NVESGNYEDC 240 GNYVVDSEQP IEEEELKPII RDGSIQPCSL FPGEQIGCGV EDEKAVNLET SNDNVFVAAD 300 TCYSDIPVDD ANYMPEEPFI DHSNNLSLSD GLSGAPLQDD FNFEDYLNFF DDEDAQSLSL 360 DVSQLLGSEE GLDQKPSPEE LEKEKESGEG SSSRQDADVT DPFLKKASHM FAPPSFSSSQ 420 FQTKDAAIRL HAAQSSGSVH VTAGMMRISN MTTLAAESSM GWSYDKNGNL NIVMSLGLVQ 480 SKTGGITTTR AMLIFMCFWI LLLYISFKIG TIVSAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12987 | 0.0 | microspore| microspore-derived embryo| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00078706001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641356 | 0.0 | KP641356.1 Brassica napus NAC transcription factor 78.1 (NAC78.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620811.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A078FMJ2 | 0.0 | A0A078FMJ2_BRANA; BnaC02g02740D protein | ||||
STRING | Bra028790.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |