PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076300001
Common NameGSBRNA2T00076300001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 1068aa    MW: 118366 Da    PI: 9.9036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31198254259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  GSBRNA2T00076300001 198 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254
                          8****************************************.***************8 PP
2WRKY103.11.6e-32342400159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  GSBRNA2T00076300001 342 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 400
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-28189256IPR003657WRKY domain
SuperFamilySSF1182908.63E-25195256IPR003657WRKY domain
SMARTSM007741.1E-35197255IPR003657WRKY domain
PROSITE profilePS5081124.076198256IPR003657WRKY domain
PfamPF031062.3E-24198253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-35327402IPR003657WRKY domain
SuperFamilySSF1182901.83E-28334402IPR003657WRKY domain
PROSITE profilePS5081137.711337402IPR003657WRKY domain
SMARTSM007741.3E-37342401IPR003657WRKY domain
PfamPF031069.9E-25343400IPR003657WRKY domain
SuperFamilySSF561129.98E-81568840IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.203.5E-25570660No hitNo description
PROSITE profilePS5001137.531573834IPR000719Protein kinase domain
SMARTSM002201.2E-71573834IPR000719Protein kinase domain
PROSITE patternPS001070579602IPR017441Protein kinase, ATP binding site
PfamPF000697.6E-45649834IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.4E-52661836No hitNo description
PROSITE patternPS001080669681IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MAVGDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFLG GGDGLSLSPG PLSFVSSLFV  60
DSFPDLLTPD NQRTTSFSQL LAGAMSVSPG SGRSTAGMIA GGGPLFTIPS GFSPSSLLTS  120
PMFFPPQQSP TQTVFVQPQS QPKRPDSFPN QMPPSTSTTV HGRRSCKAPQ ADRYNNPAAN  180
NNNTNRSYNV VHVDKPADDG YNWRKYGQKP IKGCEYPRSY YRCTHVNCPV KKKVERSSDG  240
QITQIIYKGQ HDHERPQNRR GGGGELRGSG EIGDIHYIGG VGHMESSDDS GYANDHDNDN  300
DDDNEDIPAS KIRKIDGGVS TTHRSVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP  360
HPRSYYKCTT ANCTVRKHVE RASTDVKAVI TTYEGKHNHD VPAARNGTAP ATPATAGTSD  420
HHRLGIDLAA RDRPPCVGPV YPSRSILTPP GNFLTISSSI MGCFNSKHSS PPPRPIRRRS  480
DTAANRGHPQ NTHKPYVLPT PPSHRRVVNS SPKKHHNNDD DAPRSKTTGV SHRSGLPHGN  540
VEVEQVAAGW PSWLTSASPE AVHGLVPLRA EDFEKREKIG QGTYSNVFRA CEISTGRVMA  600
LKKIRVQNFD TENIRFIARE IMILRRLDHP NIMKLEGIIA SRNSNSMYFI KCYMQQLLLA  660
VEHCHLRGIM HRDIKAANIL VNNKGVLKLA DFGLANIVTP RNKNQLTSRV VTLWYRAPEL  720
LMGSTSYSVS VDLWSVGCVF AEILTGRPPL KGRTEIEQLH KIYKLCGSPD EELWRNNKLH  780
PQTKMFGQQH QYEGCLRETF EEFPKTAVNL LENLFSIDPE KRGTASSALM SEYFNTKPYA  840
CDPSTLPKYP PNKEMDAKYR EELQRRRRAT IKKRDNLVSK KTGKSRRTIK DPLSKLPTQQ  900
ETKKEAETEI TLQTPSETSQ ATTRSEFPYT ALSQATAPAS GFAWAGAKKR KENDAASTLT  960
YNQPAGSASH VSGMSMAFAK NTFGLTINED RPFLRPHVSL DSSGDILLYP NVHHKKEEDN  1020
MSQLNSDLRN VGANPKIFQT NGMNEILRRT ESDARVAVRR PPRIERG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A1e-5657987719345Cyclin-dependent kinase 13
5efq_C1e-5657987719345Cyclin-dependent kinase 13
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.3031e-170bud| flower| microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076300001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638723.10.0PREDICTED: uncharacterized protein LOC106343907 isoform X2
TrEMBLA0A078I0A50.0A0A078I0A5_BRANA; BnaC05g48590D protein
STRINGBo5g156460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-142WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]