PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076133001
Common NameGSBRNA2T00076133001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 307aa    MW: 34664.6 Da    PI: 8.9452
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076133001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35181102103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ ++e++sws+ ++sfvv++  efa+  LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00076133001  18 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFARLFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFIRGQK 98 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  GSBRNA2T00076133001  99 QLLKSIVRRKPS 110
                          ********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5714107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGSNSESVST VVSSIPPFLS KTYDMVDDPL TDEVVSWSSG NKSFVVWNVP EFARLFLPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFIRGQKQL LKSIVRRKPS QVQPPQQPQV  120
QHSSVGACVE VGKFGLEEEV ERLQRDKNVL TQELVRLRQQ QQVTEHHLQN VGQKVHVMEQ  180
RQQQMMSFLA KAVQSPGFLN QFSQQNNEGN NQHVSEGNKK RRLPVEDQKY SGGYGANGLS  240
RQIVRYQSSM NEAADTMLEQ IHNMSNPQSR QEPLSNNHGS FLLGDVPNIS DNGSSTNGGQ  300
FAVFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-251311015123Heat shock factor protein 1
5d5u_B2e-251310724129Heat shock factor protein 1
5d5v_B2e-251310724129Heat shock factor protein 1
5d5v_D2e-251310724129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076133001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732338.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-1e-like
SwissprotQ9SCW51e-170HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A078I2340.0A0A078I234_BRANA; BnaA05g32280D protein
TrEMBLA0A3P6DDI80.0A0A3P6DDI8_BRACM; Uncharacterized protein
STRINGBra032023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-149heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]