PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075636001
Common NameGSBRNA2T00075636001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22289.7 Da    PI: 9.5825
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075636001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.31.9e-131962750
                         HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           r + fskR+ g++KK +E+  LC++e + ++fs +gk y+++
  GSBRNA2T00075636001 19 AARMIMFSKRKSGLFKKMNEIVSLCNVETSFLVFSDSGKPYTFA 62
                         568899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-14564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.381565IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-18676IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-13727IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161961IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKFTKGKQKI EMKKVGAYAA RMIMFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT  60
FAYPSLKEAV GQFKNPLRDE PSATINTGPL VEAYRRQKNQ DLMERYMDLV EELEIKNEKE  120
RILKKIIKEN KEKILWNIPP AEGLSVEEKK WMRQTFVDLH VYLGDMALKC FGNDGDRSSS  180
SQESYGRDGE TYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075636001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638752.11e-142PREDICTED: MADS-box transcription factor 23
TrEMBLA0A078HWS41e-141A0A078HWS4_BRANA; BnaC05g47460D protein
TrEMBLA0A0D3CMV91e-141A0A0D3CMV9_BRAOL; Uncharacterized protein
STRINGBo5g148390.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-42AGAMOUS-like 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]