PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072767001
Common NameGSBRNA2T00072767001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 251aa    MW: 28017.8 Da    PI: 4.1229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072767001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69e-08140159626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ff++ G C++G++C+ +Hg
  GSBRNA2T00072767001 140 CKFFMQ-GRCRFGSSCRSSHG 159
                          ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.535134161IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4134160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5139160IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4140159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASEEDKALE DLLGYQLKDQ RESLSAIEEA LASDPSNPEL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNA AAVKPANELE PEREDLDDGS KCRFRHTDGR WYNGRIIGFE  120
GSDSAKISFL TPTSESMMMC KFFMQGRCRF GSSCRSSHGV DVPISSLKNY EQTEWKQSMV  180
GSKIWAVSGS KYEIWRVGEL ESWDDKLQLG GVVFRDDGSS AKLGSDAMVL SEYADDDGED  240
EEEEEEEEED G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072767001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599834.11e-179PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK491e-133C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A078JPD70.0A0A078JPD7_BRANA; BnaCnng58340D protein (Fragment)
TrEMBLA0A3P6GE271e-179A0A3P6GE27_BRAOL; Uncharacterized protein
STRINGBo8g099560.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-124C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]