PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00071983001 | ||||||||
Common Name | GSBRNA2T00071983001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 271aa MW: 31284.6 Da PI: 6.8833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175 | 2.1e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+v+yLk+++ ++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk GSBRNA2T00071983001 9 LPPGFRFHPTDEELIVYYLKNQTMSRPCPV-SIIPEVDIYKFDPWQLPEKTEFGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDK 97 79****************************.89***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s ++++vg+kk Lvfykgr pkg ktdW+mheyrl GSBRNA2T00071983001 98 AIYS-GSSNVGVKKALVFYKGRPPKGIKTDWIMHEYRL 134 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-65 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.917 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-26 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDMNPNTTLP PGFRFHPTDE ELIVYYLKNQ TMSRPCPVSI IPEVDIYKFD PWQLPEKTEF 60 GENEWYFFSP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SGSSNVGVKK ALVFYKGRPP 120 KGIKTDWIMH EYRLNDSRKA STKRSGSMRL DEWVLCRIYK KRGAGKLLDE KEGYMDEVQI 180 DETLTVVTNE AKPRNEEEIT MMTSTKLPRT CSLAHLLEMD YMGPISHILT PFDLHSPDPN 240 IVNESGWFGD LQISQDEIMN HHRQASMFQF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-70 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-70 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-70 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-70 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-70 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-70 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-70 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.7212 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00071983001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966750 | 0.0 | KC966750.1 Brassica napus NAC transcription factor 29 (NAC29.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302976.1 | 0.0 | NAC transcription factor 29-like | ||||
Refseq | XP_009105493.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
Swissprot | O49255 | 1e-168 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | A0A078HQP6 | 0.0 | A0A078HQP6_BRANA; BnaC06g30680D protein | ||||
STRING | Bra004385.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7707 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-170 | NAC-like, activated by AP3/PI |