PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068763001
Common NameGSBRNA2T00068763001, LOC106447359
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 714aa    MW: 74912.9 Da    PI: 10.2522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068763001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.3e-10194223130
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                          r++W++eEd+ l+ avk++G g+W++I+++
  GSBRNA2T00068763001 194 RKKWSAEEDLELIAAVKRHGEGSWALISKE 223
                          789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.094189246IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11189241IPR009057Homeodomain-like
SuperFamilySSF466892.09E-9190244IPR009057Homeodomain-like
SMARTSM007172.2E-5193244IPR001005SANT/Myb domain
PfamPF002494.5E-8194223IPR001005SANT/Myb domain
CDDcd116603.97E-8195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVDSNKKRKE FISEGDMATL LQRYDTTTIL KLLQEMAYYA EPKMDWNELV KKTSTGITCA  60
REYQLLWRHL AYRDSLLPMD DNALLQDDDS DMEFELEASP AVSVDAVTEA VAHVKVIAAS  120
YVPSESDIPE DSICEAPLTI NIPYGLQRRP QEPSDSYWSS RGMNITFPIS LQKAAEGHSG  180
NGLASNMGGP RKKRKKWSAE EDLELIAAVK RHGEGSWALI SKEEYEGEIT VAQLSQRWGS  240
IRRRGDLSNS STQSYQQRTE AANRALSLAV GNRVPSKKVA VGIPPVLTSG STTGAQGNGS  300
SLQGQQQAKP VVQAIPRAAT AVQTAKSRVT ARKPTSTLRA ELMVTANSVA TAACMSGLGT  360
AASVPKVEPG KSAAPALVSK VKSSQASLPR PSGISSSVMN VEPVKTASAA SLPRPSGISP  420
TLNAEPVKSA STASFPRPLG TISSSKAEPV KTALAAALPR PSGIISAPKA DLVKTGHAVS  480
LPRPSGITSS TKAELMKTAS AASSPRPESM PSAPKGEPLK SVSAATTKTQ VVGPLSARNA  540
ANGPFNKPSP MAPFSKGPTI QNISVPSRFA SSRLAPTQRV NATTVMPQNP SVGVAVTSSS  600
KPVGVQKEQT QGSRTSPLVT TTLQPNKTIS TNSVISAGKP VATHVDTPPS LMPKKDQVPQ  660
TCTDKSSLAK PPEKVSSSTV PPSVVAEPEP KPKDEASKGK SPDGATVTGT EQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068763001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744717.10.0mucin-2
TrEMBLA0A078HN060.0A0A078HN06_BRANA; BnaA09g14920D protein
TrEMBLA0A397XZV80.0A0A397XZV8_BRACM; Uncharacterized protein
STRINGBra027882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]