PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060800001
Common NameGSBRNA2T00060800001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 407aa    MW: 44558.7 Da    PI: 5.3279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05106126323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C+ C+k F+++  L  H+r H
  GSBRNA2T00060800001 106 CSVCHKKFTSRKALYGHMRFH 126
                          *******************99 PP
2zf-C2H211.20.0011261283123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+ksF++   L  H  +H
  GSBRNA2T00060800001 261 HVCVTCNKSFTSYQALGGHRASH 283
                          79**********99999998887 PP
3zf-C2H214.50.0001312334123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+ksF++   L  H r+H
  GSBRNA2T00060800001 312 HVCDICHKSFPTGQALGGHKRRH 334
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-66691IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-967126No hitNo description
PfamPF139129.6E-96991IPR007087Zinc finger, C2H2
SMARTSM003550.16991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9266996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM003550.023104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014104126IPR007087Zinc finger, C2H2
PfamPF139122.6E-4106127IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576676.27E-5259289No hitNo description
PfamPF139123.9E-10261285IPR007087Zinc finger, C2H2
SMARTSM003550.37261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827261288IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
PfamPF139124.0E-13312335IPR007087Zinc finger, C2H2
SMARTSM003550.043312334IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12312334IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-5312336No hitNo description
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEQCYKDDCG SSLGFIVEKR KDIEKDQAED DEKEPKSISL REEEEEDNDD RANSIDLEGD  60
VEEEEEKKHM CSECGKQFMS GKALGGHKRI HVLENQNKSG ESEIDCSVCH KKFTSRKALY  120
GHMRFHPDRA WKGVLPPPPP HPLGNSSSST LSIDDHHVGE FTISDHDDDD DGYDNIDAKD  180
QIDESDNIDA KDLMLLATTA EAVNLDVAET CDSHSAEDMK KKKRRLPEIE KVSSSSTHDH  240
HHQLGDVAAA AEEGGGAREK HVCVTCNKSF TSYQALGGHR ASHNKAKILE NHHARANREA  300
SLLGTEAMIT DHVCDICHKS FPTGQALGGH KRRHWTGPVS SEAATADPTA PAAGSSHQVT  360
ETVQEGQGEP HAESAKASEE DDAKKNLCSL YSDCKRGPKT AHGKTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224KKKKRR
2220224KKKRR
3220225KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060800001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679216.10.0zinc finger protein ZAT1-like
TrEMBLA0A078FG340.0A0A078FG34_BRANA; BnaC03g13780D protein
STRINGBo3g021160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-90C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]