PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056669001
Common NameGSBRNA2T00056669001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 489aa    MW: 54368.8 Da    PI: 5.1549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056669001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.7e-06141160626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ff++ G C++G++C+ +Hg
  GSBRNA2T00056669001 141 CKFFLQ-GRCRFGSSCRLSHG 160
                          ******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-5135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5140161IPR000571Zinc finger, CCCH-type
SMARTSM004437.9E-12296342IPR000467G-patch domain
PROSITE profilePS5017411.895298344IPR000467G-patch domain
PfamPF015854.2E-11298340IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPDL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNN AAGVKPANEL EPERKDLDDG SKCRFRHIDG RWYNGRIIGF  120
EGSDSAKISF LTPTSESMMM CKFFLQGRCR FGSSCRLSHG VDVPISSLKN YEETEWKQSM  180
VGSKIWAVSG SKYDVWRVGE LESWDDKLQL GGVVFRDDGS SAKLGSDAMV LSEYADDDGE  240
GEDDEEEDGS GSGSEEESVS SDYDEEFPQG IGILGTTDQR RGGVQNETAI FAKWENHTRG  300
IASKLMANMG YCEGMGLGVS GQGRLDPIVA KVLPPKRSLD HALEHIKNGE AKSEKPKKKR  360
SRGGRRKREK KFAEAAREAK LEEESDLFSF INNHEKATGR ESVKKRQNIG PVDRKALVAY  420
EDEVKDLKFQ VKKLEEMVKR NKRDQSFSDA ATRRLKEVQK ALASTLAAQA SASNAVESKE  480
KEKKWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355370PKKKRSRGGRRKREKK
2364369RRKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056669001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664043.10.0zinc finger CCCH domain-containing protein 22-like
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A078JGY00.0A0A078JGY0_BRANA; BnaAnng23060D protein
STRINGBra007830.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]