PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00052885001 | ||||||||
Common Name | GSBRNA2T00052885001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 464aa MW: 51315.1 Da PI: 6.2595 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F++ L H r H GSBRNA2T00052885001 74 HICCECGKRFKSGKALGGHKRIH 96 68*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.73E-6 | 72 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 72 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.19 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-7 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.97 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.954 | 126 | 148 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0055 | 128 | 149 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.18E-7 | 308 | 331 | No hit | No description |
PROSITE profile | PS50157 | 9.411 | 309 | 336 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.55 | 309 | 331 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-10 | 309 | 333 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 311 | 331 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.18E-7 | 373 | 400 | No hit | No description |
PROSITE profile | PS50157 | 9.494 | 378 | 400 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 378 | 400 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-11 | 378 | 401 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 380 | 400 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDQCRFSLGR PRFGSIKFKV PNSSQPFISQ KRKEMEEEDQ AEEEAKSLGF REEEDGEDDD 60 GAKSIEEEEK KKKHICCECG KRFKSGKALG GHKRIHVLEA RKFSMVRPKM VAGAVGRSEE 120 RDDFEVDCCV CHKKFTSMKA LYGHMRFHPD RGWKGVLPPH HHHPLDHDGG EFISSDDDGD 180 GDYEDDDDDE NSELWDNHWG LDNVVDLKDS IKGWAVTGKR GRRSALKDPP PQDVDAKDLL 240 FLATTAEAVD LDAAETCDSR SVEEMMKKRK KKRKRLSEME KESTSSHDHH HQLEVGAAEE 300 GGGGAREKHV CVTCNKSFAS YQALGGHRAS HNKVKISENH QARANSEAVL LGTEAMMAGL 360 ATAQGPNTSL SIGNKGDHVC NICQKSFTTG QALGGHKRCH WPGPTSNEAA TAPVPASNES 420 ATTAPTPLVA CSSSQVTETV QEEKKLKRKF LEFDLNELPP NEE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 270 | KKRKK |
2 | 266 | 274 | KKRKKKRKR |
3 | 268 | 274 | RKKKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00052885001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022566859.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A078H5T1 | 0.0 | A0A078H5T1_BRANA; BnaA10g10420D protein | ||||
TrEMBL | A0A3P6CH68 | 0.0 | A0A3P6CH68_BRACM; Uncharacterized protein | ||||
STRING | Bo9g123640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-136 | C2H2 family protein |
Publications ? help Back to Top | |||
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