PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047896001 | ||||||||
Common Name | GSBRNA2T00047896001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 211aa MW: 23014.2 Da PI: 3.9089 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.9 | 1.6e-12 | 16 | 104 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 ffkv +p d++ l +p +f + ++k+ + +++++ g+ W++kl k+ g + + +GWk+ vk+ +Lk g+f+ F++dg GSBRNA2T00047896001 16 FFKVYLPDDSGD--DLDIPISFNSF--LPKPLPEYIIVRSIYGNIWKLKL--MKCCGDdvdkVSMVNGWKRIVKDEDLKGGEFLAFEFDG 99 788886666554..59******743..56779999***************..55555455679999*********************998 PP SSEE. CS B3 87 rsefe 91 ++ f+ GSBRNA2T00047896001 100 SRLFN 104 66663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-15 | 9 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-19 | 9 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-14 | 14 | 108 | No hit | No description |
PROSITE profile | PS50863 | 11.307 | 14 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-12 | 16 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-10 | 16 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNKGTGDSSD DCLPKFFKVY LPDDSGDDLD IPISFNSFLP KPLPEYIIVR SIYGNIWKLK 60 LMKCCGDDVD KVSMVNGWKR IVKDEDLKGG EFLAFEFDGS RLFNFCIYGQ ATCKRLGSSV 120 KTKEITDESE GEDGKSCVDV IVIDDDSTDD DDDVSSGQGS GMEDQSTKDI IVIDEDTSDG 180 DDETRSGVET EIIEKGSSEV STKSDSGEGE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 4e-13 | 6 | 113 | 1 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047896001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510757.1 | 1e-124 | PREDICTED: B3 domain-containing protein At5g60142-like isoform X1 | ||||
Swissprot | Q9LST3 | 1e-59 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | A0A078H2E7 | 1e-145 | A0A078H2E7_BRANA; BnaA10g12970D protein | ||||
TrEMBL | A0A397XKE7 | 1e-145 | A0A397XKE7_BRACM; Uncharacterized protein | ||||
STRING | Bo9g141120.1 | 1e-112 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 1e-61 | B3 family protein |
Publications ? help Back to Top | |||
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